G170266


Basic Information

Item Value
gene id G170266
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22765723 ~ 22767755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU201475
GGCTGATCAAGTTTATTTGATCGGTTTAGAAAAGACaatgtttacacaaacataaaatattaaatcactCTAGTACACTAAAATATTACCACAATGATATTCCATTACCATACTTATATTCTTTCTTAGCATTgtcattattaattttactaattacatttttttaagttttaagtttcctttcctgtgtttttagtttttgaacattacattttacattaaagaaTCTTTTGAAAACATAATGAACAACATGGAGTAGAAGGTCAGGAGTGTAATCCTCTGTAAGGCGCAGGAGTTTGCATCAATTTTATGTAGCGTTTTGCAATCCATCAGCTATTATTCTTAGGCACAATATTTGGACCCGTGTTCCACATGGGcaaagacacagagaaacaccGACAAATAATGTAGTCCAACTactgtgaaatattttataaagcatgTTTTTAGAAGCACAAGACAACAAAGGAAAGTAAAAGCTTGTGTTTGGAGTGTGCGGTGGCATATTAATGTTCAGAGAATAAGAACAGAGGAGCAGAGGTGTATGATCAATGTAAAGATGCTGTCAGTGTTCATACAGGAGGAAAAACATCACAGGAAAACAGTGCACAAGCTGAAGTTGGGAGTTCAAATTTAGGATTCATTGTTTAAAGCTGCCTGTAgtgctgctttttttaatcatcttatctgaaaaaacaaatgtgGTTGCCTTCATTTCAGCTGGATGTTTAGGGAAAATACCTGAAGTGACATGTTTGCTAATCCTGTTTGTCCagttatatatatgtacagtcaggtccggaagaatttggacaatgacagagtttttgtgattttgcctttaagagacagcaaaaacattaggtgtggccaaatcaacagttgggtacattcttaaaaagaaagaaagcactggtgagctcaacaacatcgaaaggcctggaagaccgtggaagacaactaaagtggatgattgcagatgATTGCAGAAGTCaggaatactctggagaaggtaggcatatcattgtcaaaatctacaatcaagacacgccttcataaatgtaaataaatagggtttacaacaaggtgcaaaccaccggtaacaggaaagccagattagactttgccagaaaacatctaaaaaagcctcacATGTtatggaataagattctttgaactgatgaaaccaagattaacttgcaccagaatgataggaagagaaatgtatggcaaaagaaaagaacagctcatgatccaaagtataccacatcatgtgtcaaacatggtggaggcattgttatggcatgggcatgcaaggctgccaatggaacgggctcactggtgtttattgatgatgtgactgctgatagaagtagcaagatgaattctgaggtgtatagggctatactctctgctcacattcagccaaatgctacaaaactgaccctaaacatactgcgaaagcaactcaagactttttgaaggcaaagaaatggaatattcttcaatggccaggtcagtcgcctgatctcaacccaatagagcatgcttttcatttactgaagacaagactgaaggcagaaagacccacaaacaagcggCAACTGAaagtggctgcagtgaaggcctggcaaagcatcttcAGGGAGGAAACTTAGAacttgagttttgagaacacgggctccagacttcaggcagtcattgactacaaaggattttcatccaattattaaaattatgtttatatttacaattatatcactttgtccaaatacctttgagcccctgaaaatggaggtactttgttaaaaatggctgtgattccataaatgccatatttttgtggaacctcttaaaataaagctgactttagtctacacttcgatcacatcttgattgttttatttcaaatctattgtcatggtgtataaaggcaaaatcacagaaactgtcactgtccaaatacttctggacctgactgtgtgtatacacacacacacacacacacacacacacacacacacacacacaca
>TU201477
GGCTGATCAAGTTTATTTGATCGGTTTAGAAAAGACaatgtttacacaaacataaaatattaaatcactCTAGTACACTAAAATATTACCACAATGATATTCCATTACCATACTTATATTCTTTCTTAGCATTgtcattattaattttactaattacatttttttaagttttaagtttcctttcctgtgtttttagtttttgaacattacattttacattaaagaaTCTTTTGAAAACATAATGAACAACATGGAGTAGAAGGTCAGGAGTGTAATCCTCTGTAAGGCGCAGGAGTTTGCATCAATTTTATGTAGCGTTTTGCAATCCATCAGCTATTATTCTTAGGCACAATATTTGGACCCGTGTTCCACATGGGcaaagacacagagaaacaccGACAAATAATGTAGTCCAACTactgtgaaatattttataaagcatgTTTTTAGAAGCACAAGACAACAAAGGAAAGTAAAAGCTTGTGTTTGGAGTGTGCGGTGGCATATTAATGTTCAGAGAATAAGAACAGAGGAGCAGAGGTGTATGATCAATGTAAAGATGCTGTCAGTGTTCATACAGGAGGAAAAACATCACAGGAAAACAGTGCACAAGCTGAAGTTGGGAGTTCAAATTTAGGATTCATTGTTTAAAGCTGCCTGTAgtgctgctttttttaatcatcttatctgaaaaaacaaatgtgGTTGCCTTCATTTCAGCTGGATGTTTAGGGAAAATACCTGAAGTGACATGTTTGCTAATCCTGTTTGTCCagttatatatatgtacagtcaggtccggaagaatttggacaatgacagagtttttgtgattttgcctttaagagacagcaaaaacattaggtgtggccaaatcaacagttgggtacattcttaaaaagaaagaaagcactggtgagctcaacaacatcgaaaggcctggaagaccgtggaagacaactaaagtggatgattgcagatgATTGCAGAAGTCaggaatactctggagaaggtaggcatatcattgtcaaaatctacaatcaagacacgccttcataaatgtaaataaatagggtttacaacaaggtgcaaaccaccggtaacaggaaagccagattagactttgccagaaaacatctaaaaaagcctcacATGTtatggaataagattctttgaactgatgaaaccaagattaacttgcaccagaatgataggaagagaaatgtatggcaaaagaaaagaacagctcatgatccaaagtataccacatcatgtgtcaaacatggtggaggcattgttatggcatgggcatgcaaggctgccaatggaacgggctcactggtgtttattgatgatgtgactgctgatagaagtagcaagatgaattctgaggtgtatagggctatactctctgctcacattcagccaaatgctacaaaactgaccctaaacatactgcgaaagcaactcaagactttttgaaggcaaagaaatggaatattcttcaatggccaggtcagtcgcctgatctcaacccaatagagcatgcttttcatttactgaagacaagactgaaggcagaaagacccacaaacaagcggCAACTGAaagtggctgcagtgaaggcctggcaaagcatcttcAGGGAGGAAACTTAGAacttgagttttgagaacacgggctccagacttcaggcagtcattgactacaaaggattttcatccaattattaaaattatgtttatatttacaattatatcactttgtccaaatacctttgagcccctgaaaatggaggtactttgttaaaaatggctgtgattccataaatgccatatttttgtggaacctcttaaaataaagctgactttagtctacacttcgatcacatcttgattgttttatttcaaatctattgtcatggtgtataaaggcaaaatcacagaaactgtcactgtccaaatacttctggacctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201475 True 2033 lncRNA 0.38 1 22765723 22767755
TU201477 False 1978 lncRNA 0.37 1 22765723 22767700

Neighbor

gene id symbol gene type direction distance location
LOC113529714 mok coding upstream 511455 22241015 ~ 22254268 (+)
klhdc2 klhdc2 coding upstream 566832 22183763 ~ 22198891 (+)
LOC113529717 klhdc1 coding upstream 594542 22147126 ~ 22171181 (+)
ap4s1 ap4s1,LOC107590907,LOC107582370,LOC107733114,LOC107694810 coding upstream 1167058 21590408 ~ 21598665 (+)
coch coch coding upstream 1209292 21550393 ~ 21556431 (+)
mpp5a mpp5,LOC108443925,LOC107553288,LOC107657730,LOC107655321,LOC107752770,LOC107707694 coding downstream 256901 23024656 ~ 23052674 (+)
itsn2b LOC108269989,LOC108441044,LOC107594821,LOC107719497,LOC107590922 coding downstream 299805 23067560 ~ 23107949 (+)
esrrga esrrg,esrrga,LOC107733169,LOC107582200,LOC107590918,LOC107697723 coding downstream 660545 23428300 ~ 23495384 (+)
ush2a ush2a coding downstream 742446 23510201 ~ 23719967 (+)
c10h14orf28 c9h14orf28,clg15h14orf28,LOC106581668,LOC106610876 coding downstream 1001237 23768992 ~ 23777316 (+)
G170261 NA non-coding upstream 6247 22759241 ~ 22759476 (+)
G170260 NA non-coding upstream 8279 22757240 ~ 22757444 (+)
LOC117598286 NA non-coding upstream 348872 22416176 ~ 22416851 (+)
LOC113530233 NA non-coding upstream 354361 22411162 ~ 22411362 (+)
G170083 NA non-coding upstream 379573 22385939 ~ 22386150 (+)
G170323 NA non-coding downstream 215209 22982964 ~ 22983351 (+)
G170324 NA non-coding downstream 216192 22983947 ~ 22984361 (+)
G170325 NA non-coding downstream 216822 22984577 ~ 22984930 (+)
G170295 NA non-coding downstream 217339 22985094 ~ 22991899 (+)
G170482 NA non-coding downstream 235840 23003595 ~ 23003831 (+)
G169692 LOC107990201 other upstream 945664 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 999350 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 1091262 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 2234501 20521595 ~ 20531222 (+)
fsip1 fsip1 other upstream 2311918 20365174 ~ 20453805 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other downstream 94052 22861807 ~ 23022395 (+)
kdm1a kdm1a other downstream 1695711 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 2226738 24994493 ~ 25000619 (+)
G171329 NA other downstream 2236228 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 2408619 25176374 ~ 25177897 (+)

Expression


Co-expression Network