G170435


Basic Information

Item Value
gene id G170435
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22855494 ~ 22863767 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU201673
GAAAATACTTCCATAGTTGTACAAAGTGACATTAATCCTTAACAACGCTATCAAACTGGATAGCAGGCATGACAACTGCAGTACAAGATCATCCACtatcttgtttgttttgagttgaatgggtcacatgacaaaaaaaaggtcattgtTTTGAATATCTCCATTTTCTCAGTCCACACTACAACGTGAAAACAACGTTTTCAAATGTATCCACTTGGGAGAGCGTTTTTGAAACGCTCCTTTTTCGATGGACAAAAATGCTGTCTCAATGTGTACAGCAGGTCAAAACGTAGCGAAAAAGAGCGCAAATAAATCGCAAATAAATTtgcgttttcaaatttatctGGATAATGTGGACGTAGCCTTAGGTGAGGGTTGAAAAGTGTGTGCACATTCATAAGGCTCGACTTTCATGTCCAAAACATCACCTCACCAACCACacccttttatttatcaccaaataactcctataaaacaCGTTCATCATAAGGAAAAATACTGGGAGAAGATATCAAGGTCACTTGAGCTTGTAAAAACGACAAAACACTACTGCCCAAAAATTATTTGTGTAGATGTAACAAAATGGAAGTTTGCCATCTGTCCCATTGATTAACACGTGAATAGGCggggctaattttttttttttttttttttttttttttttttttaactgcaacCAGCCACTAGAGgacctcagagacattttggctttaCTTTTGCACCCCGGTATATACATTCACCCATATATAAGGCCATTGGGCGTGGTTaacacctactgacatgtttttgtacCTATTTATTTATGAGGCGTTAAAAAATCCGTCTGAAACATAATTTATGCATTATAAGGCATGAAAATCGTCTATTCTATTTCACACATTAATGGCCATTTTAGCGTACCATAGATTTCTATAACCAGGTAAATAGCATGTAGCTCATGCGCAGTGAAGCCAAAGCATCACGAACACGTGACGTGAACTCACTGCatttgcattgtgtgtgtgtatgagcgtCCTCTCCTTTCCCATCGGGTGCAATAGCAGCCATATTTATTCACAAGGAGACTACAGCCGACTTTATCCACGTTTGGAAAACCGGGGTTCATGTGTGTCAAAAATAGTCAGacgttacattttatttaatttccataGGCCTACTGCGGCGAATTCAAACGCGCGCGCTGAAGTCAGCTGAAGTCCAAAACTGCTGTGCAGTGGCCCAACAGTAAAAATATTAGCatcatacatgtacacacacacatatatacattagatagatagatagataggtgtGAGCGAATTTAGTCTCCAAGCCCTACATAACGGCTGCgtacaataaatgaataattcatcaCACGAAACAGCACAAACTGATTTTTTGAGAGCGGGTTTTGCTGCATAACAGACTTAAAAGCGATCACACACAGCCTGAGACTCTGGCTTCAGTGCAGATGGAAAGAAGGAGACGCAAAGCTCTGAGCCAGCAGGTTGCACGAGACAAGCGACTGACAGGCGAAACGAGCAGAAGCGAAGCCAGCTCACATGACTGCAGTTAAAACAGACAGCCATACGGAAAGTTTCCGAAAAACAAACGTGACCAGTGGACGTGAAATACAAGGATTAGGTACCATTTCGCGCCTACCTGTCAAGATTCCAACTCGAATTTGGTGGTCATGGTTAGTTAAAATCATTCCGTCTGACGCCATGTTCCCAAGCGTTCCTCAGACTCACGGAGACAAGAGCCGAGCGCCGAGCGCCTCGAACCGCGGGGATTGGCAAGACGCGAGAACCGAGTCAGGCCTGAAGAGACGAACGACAAGTGACTCGAACGAAGAGACAGAACATGCACCCCGGCACTCCAAGAAGCTCCCTGGGCCCCAACTTAATGCTACTCACTCCTGCTTGTCATGCCCTAAGACGGGACAACCGCAACCCCACTCCTCTTCACCCTCACTCTGCATCCCTCTTACCTACCCTACACCgaaactataaataaaagaacacaTTTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201673 True 2011 TUCP 0.43 2 22855494 22863767

Neighbor

gene id symbol gene type direction distance location
LOC113533941 fut8a,LOC108270174,LOC108433921,LOC107752771,LOC107592788,LOC107674109 coding downstream 21502 22767942 ~ 22833992 (-)
LOC113534106 NA coding downstream 117999 22582782 ~ 22737495 (-)
dync1h1 dync1h1 coding downstream 507341 22285848 ~ 22348153 (-)
wdr20a wdr20 coding downstream 580639 22261548 ~ 22274855 (-)
LOC113529708 nemf coding downstream 614491 22197553 ~ 22241003 (-)
lpin1 lpin1 coding upstream 249601 23113368 ~ 23147738 (-)
spata17 spata17 coding upstream 370826 23234593 ~ 23265065 (-)
kctd3 kctd3,LOC107590917,LOC107719476,LOC107697722,LOC107733121 coding upstream 858027 23721794 ~ 23735252 (-)
ptpreb ptpreb,LOC108270210,LOC107590916,LOC108444109,LOC107582256 coding upstream 876252 23740019 ~ 23760260 (-)
LOC113534104 klhl28,LOC106581578 coding upstream 916248 23780015 ~ 23792144 (-)
G170428 NA non-coding downstream 87718 22765840 ~ 22767776 (-)
G170129 NA non-coding downstream 529047 22290481 ~ 22326447 (-)
G170120 NA non-coding downstream 598769 22255617 ~ 22256725 (-)
G170020 NA non-coding downstream 740744 22114395 ~ 22114750 (-)
G170017 NA non-coding downstream 743578 22111579 ~ 22111916 (-)
G170461 NA non-coding upstream 119214 22982981 ~ 22983368 (-)
G170476 NA non-coding upstream 120184 22983951 ~ 22984361 (-)
G170478 NA non-coding upstream 121316 22985083 ~ 22986622 (-)
G170477 NA non-coding upstream 122929 22986696 ~ 22991902 (-)
G170558 NA non-coding upstream 241468 23105235 ~ 23105945 (-)
G170023 NA other downstream 739618 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 1735869 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 2038055 20813689 ~ 20817439 (-)
G169119 NA other downstream 2289695 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 2524748 20322764 ~ 20330746 (-)
greb1 greb1 other upstream 284976 23148743 ~ 23179511 (-)
luzp1 luzp1 other upstream 1626471 24490238 ~ 24544079 (-)
G171256 NA other upstream 1917515 24781282 ~ 24926224 (-)
G171569 NA other upstream 2395072 25258839 ~ 25259362 (-)
G171734 NA other upstream 2715172 25578939 ~ 25582527 (-)

Expression


Co-expression Network