Gene
RNA
| Item | Value |
|---|---|
| gene id | G170461 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 22982981 ~ 22983368 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU201701 | True | 388 | lncRNA | 0.39 | 1 | 22982981 | 22983368 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113533941 | fut8a,LOC108270174,LOC108433921,LOC107752771,LOC107592788,LOC107674109 | coding | downstream | 148989 | 22767942 ~ 22833992 (-) |
| LOC113534106 | NA | coding | downstream | 245486 | 22582782 ~ 22737495 (-) |
| dync1h1 | dync1h1 | coding | downstream | 634828 | 22285848 ~ 22348153 (-) |
| wdr20a | wdr20 | coding | downstream | 708126 | 22261548 ~ 22274855 (-) |
| LOC113529708 | nemf | coding | downstream | 741978 | 22197553 ~ 22241003 (-) |
| lpin1 | lpin1 | coding | upstream | 130000 | 23113368 ~ 23147738 (-) |
| spata17 | spata17 | coding | upstream | 251225 | 23234593 ~ 23265065 (-) |
| kctd3 | kctd3,LOC107590917,LOC107719476,LOC107697722,LOC107733121 | coding | upstream | 738426 | 23721794 ~ 23735252 (-) |
| ptpreb | ptpreb,LOC108270210,LOC107590916,LOC108444109,LOC107582256 | coding | upstream | 756651 | 23740019 ~ 23760260 (-) |
| LOC113534104 | klhl28,LOC106581578 | coding | upstream | 796647 | 23780015 ~ 23792144 (-) |
| G170428 | NA | non-coding | downstream | 215205 | 22765840 ~ 22767776 (-) |
| G170129 | NA | non-coding | downstream | 656534 | 22290481 ~ 22326447 (-) |
| G170120 | NA | non-coding | downstream | 726256 | 22255617 ~ 22256725 (-) |
| G170020 | NA | non-coding | downstream | 868231 | 22114395 ~ 22114750 (-) |
| G170017 | NA | non-coding | downstream | 871065 | 22111579 ~ 22111916 (-) |
| G170476 | NA | non-coding | upstream | 583 | 22983951 ~ 22984361 (-) |
| G170478 | NA | non-coding | upstream | 1715 | 22985083 ~ 22986622 (-) |
| G170477 | NA | non-coding | upstream | 3328 | 22986696 ~ 22991902 (-) |
| G170558 | NA | non-coding | upstream | 121867 | 23105235 ~ 23105945 (-) |
| LOC117598237 | NA | non-coding | upstream | 218326 | 23201694 ~ 23229156 (-) |
| G170435 | NA | other | downstream | 119214 | 22855494 ~ 22863767 (-) |
| G170023 | NA | other | downstream | 867105 | 22115565 ~ 22115876 (-) |
| bmf1 | bmf | other | downstream | 1863356 | 21088303 ~ 21119625 (-) |
| grem1b | LOC108269477 | other | downstream | 2165542 | 20813689 ~ 20817439 (-) |
| G169119 | NA | other | downstream | 2417182 | 20564929 ~ 20565799 (-) |
| greb1 | greb1 | other | upstream | 165375 | 23148743 ~ 23179511 (-) |
| luzp1 | luzp1 | other | upstream | 1506870 | 24490238 ~ 24544079 (-) |
| G171256 | NA | other | upstream | 1797914 | 24781282 ~ 24926224 (-) |
| G171569 | NA | other | upstream | 2275471 | 25258839 ~ 25259362 (-) |
| G171734 | NA | other | upstream | 2595571 | 25578939 ~ 25582527 (-) |
