G170568


Basic Information

Item Value
gene id G170568
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23149542 ~ 23150084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU201829
tttatatcattaatatattaatcaaGAACAAAGTGAGAAACTACACATTCTGTTCTTTTGTGGATGAGTTCTTCACAGGTTATTGTtatagacatttttaataaagtcatttctTTATACAAAATGACCTTGTGATGAACTAGACTGATATTTGATATCAATTGATAGCATTATAGTGCCCTCTACTGTTAACCTGCCAGAACTGAACAAATAGCAATAAATGTCCATCAAAGGGACAAATAGCACAAAACTGAACAAATAGCACACAACTGTACAAATAGCACAAAATCAAACCAGATGAAGCAGTGAGgtactaaaactgtacaatgaCACAATCTCCTCAGACATCTTCTAATAAAGCAAGCAAGAGCAGAGAACaggctaaataaatatatacaaaaatattcgCCCTCTACTAAATATCCtttgcaaaaacattcaaaGGGTTGTACAATTCTCTATGCACGAATTAtgtcaataataaaaaagcactaTAAAAATCAAGACAGAATTTGTGGTCATACAACAGTTatggtaataaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201829 True 543 lncRNA 0.31 1 23149542 23150084

Neighbor

gene id symbol gene type direction distance location
itsn2b LOC108269989,LOC108441044,LOC107594821,LOC107719497,LOC107590922 coding upstream 41593 23067560 ~ 23107949 (+)
mpp5a mpp5,LOC108443925,LOC107553288,LOC107657730,LOC107655321,LOC107752770,LOC107707694 coding upstream 96868 23024656 ~ 23052674 (+)
LOC113529714 mok coding upstream 895274 22241015 ~ 22254268 (+)
klhdc2 klhdc2 coding upstream 950651 22183763 ~ 22198891 (+)
LOC113529717 klhdc1 coding upstream 978361 22147126 ~ 22171181 (+)
esrrga esrrg,esrrga,LOC107733169,LOC107582200,LOC107590918,LOC107697723 coding downstream 278216 23428300 ~ 23495384 (+)
ush2a ush2a coding downstream 360117 23510201 ~ 23719967 (+)
c10h14orf28 c9h14orf28,clg15h14orf28,LOC106581668,LOC106610876 coding downstream 618908 23768992 ~ 23777316 (+)
LOC113534170 fam179b,LOC108270205,LOC108266164,LOC108270136 coding downstream 647458 23797542 ~ 23820314 (+)
fancm fancm coding downstream 670762 23820846 ~ 23864133 (+)
G170567 NA non-coding upstream 37 23148674 ~ 23149505 (+)
G170484 NA non-coding upstream 130090 23006024 ~ 23019452 (+)
G170482 NA non-coding upstream 145711 23003595 ~ 23003831 (+)
G170295 NA non-coding upstream 157643 22985094 ~ 22991899 (+)
G170325 NA non-coding upstream 164612 22984577 ~ 22984930 (+)
G170610 NA non-coding downstream 225154 23375238 ~ 23375438 (+)
G170717 NA non-coding downstream 628185 23778269 ~ 23779227 (+)
G170716 NA non-coding downstream 629239 23779323 ~ 23782089 (+)
G170718 NA non-coding downstream 676979 23827063 ~ 23829186 (+)
G170893 LOC108269891,LOC108433938,LOC105908308,LOC105908357,LOC107592771,LOC107752785,LOC107674111,LOC107733184 non-coding downstream 860265 24010349 ~ 24011349 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 127147 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 1329483 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 1383169 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 1475081 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 2618320 20521595 ~ 20531222 (+)
kdm1a kdm1a other downstream 1313382 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 1844409 24994493 ~ 25000619 (+)
G171329 NA other downstream 1853899 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 2026290 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 2108727 25258811 ~ 25318277 (+)

Expression


Co-expression Network