greb1 (greb1)


Basic Information

Item Value
gene id greb1
gene name greb1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23148743 ~ 23179511 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU201842
atttattaccatAACTGTTGTATGACCACAAATTCTGTCTTGATTTTTAtagtgcttttttattattgacaTAATTCGTGCATAGAGAATTGTACAACCCtttgaatgtttttgcaaaGGATATTTAGTAGAGGGcgaatatttttgtatatatttatttagcctGTTCTCTGCTCTTGCTTGCTTTATTAGAAGATGTCTGAGGAGATTGTGtcattgtacagttttagtacCTCACTGCTTCATCTGGTTTGATTTTGTGCTATTTGTACAGTTGTGTGCTATTTGTTCAGTTTTGTGCTATTTGTCCCTTTGATGGACATTTATTGCTATTTGTTCAGTTCTGGCAGGTTAACAGTAGAGGGCACTATAATGCTATCAATTGATATCAAATATCAGTCTAGTTCATCACAAGGTCATTTTGTATAAagaaatgactttattaaaaatgtctataACAATAACCTGTGAAGAACTCATCCACAAAAGAACAGAATGTGTAGTTTCTCACTTTGTTCttgattaatatattaatgatataaatcaCCAAGCACCTGCAAAATCTCTCAAATACCATATTTAGGAGCATATGTTCTGTGCATTGGCCTACTTACTCAAAAAATTGTAGTTTTACTCAATGAAATGATATAGAATTCAGCAGTTTAGAAGGTGGTCACTGATACAGTTGTGGTAGCAAATTCTAATAAAGAGTAAGTGATGAATAATAAATCACTAATACAACTAtcgaaaaaaaaacaacaaaaacctaAGATCTGATGTTATTTCATCATGAGTTCTGTAAATCCCAGCTGACATGCTCAATATCTTTGTACATCATGAATGAGAGCATTTACTTCTTCCATGTAGCAGAGAAATGATACGCACAACACAGGCCAAACATTTGGAAGCAACTTCAAAATATAGCAGACAGTACCATATTAATTCCCATAAACCTCCCATAGATGTATACAGCAATAATTTGATTAACAACTATAACTATACGCTCAACTCTAGAGTGAGAGTACATCACTGCAGAATATTTATTCAAAACATTGGGTTAAACTAGGTATCTAAACATGAATTTCATTGACttcattgtaaaatattttgaaacattaaaaatcaattcagttttatttatatagtgcttttaacaatggacatggtcaaaagcagctttacagaaatctgcgtacaaattttaaaaaaaaaatgtatcctttatgaacaagccagaggcaacagtgacaaggaaaaactttGTGAGacgacaagaggaagaaaccttgagaggaaccagactcaaaaggcaatccatcctcatctgacaCCAgacagtgcg
>XM_026926020.2
CCTCTGAGCGACAGCCTGAGCCTGGGCGCTGATTAGTGTTAATCATCAGGGCACACGGCTGACACGCACACTGGACAGAGCTATGTGAACTATTCGCTTCCAAACACAGGAATATTTCAGCGGTTTGTTCAGCTCACTGGAGGAGATGGGTAACTCATATGCAGGGCAGCTGCGCACCACACGTTTTGAAGAGGTTCTGCACTATTCCATCGAGGCATCTCTGCGCTCCAACACTGTAGTACCCAGACCAGTGTTCTCTCAACTGTATCTGGAACCAGAGCAGAGGCCCCTCTCTCAAGAAGGCCAAATGGAaaatgaggaagatgatgatgaggatggcTCAGAGTCTAACAGTCCTCCCATTCCATATCAGATGAAGCCTGCTCCAGAAGGCTCCTGCACCACTGATGGATTCTGTCAGGCAGGTAAAGACCTGCGACTGACCTCGATGTCCACTGAAAATCTGGATGTGCCACCAGGATTTCTGCTGGTCGGGGCCAAATCTCCCAGTATACCAGGCCACATACTGGTGTGTGCGGTGGATCGCCGCTTTCTCCCGGATGAACGTGGACGTAATGCACTTTTAGGCTTCTCAGGGAACTGTATGGGCTGTGGTGAGAAAGGATTCCGCTACTTCACTGAGTTCTCCAACCACATCAACCTGAAGCTCACCACACAGCCCAAGAAACAGAAGCACTTAAAATACCATCTGCTCCGCAATGCACAGGGTGTGCTGGTCAAGGGCCCACCCATCTGCTGGAAAGGAATAGGTTTGTATCTGTGTATAGATAGCCGCGTAAGACAGACCTCCTCAAATGTGTCCGGTGGTGTAGAGGAGCAGCCATCTGGACCTGTAGCAAGCAACTCACTGCCTAATTCAGGACATGTGGGTTTAAGCACAGCCAACCTCACAGATCTGAACACACATCTCCATGCATCTGAAACTTCCCCTCCAATGACCAATGGCAGCCACATTCCAGTATCTCAGCAGCCTCTGCCCCAGCCTGTGGTGGCCAACGGCCCAGGAAGATCCACAGGATCTATGGCAAACACAGGACCACCCAAAAAGAGACACAAGGGCTGGTCCCCAGAATCCATAGGACACACTGAAGCAAGTAGTAGACCTGTGGCCTCCAACACAGTCAACGGCACAAAATCAGACACTGGGACTTCAGTGTTTAAAGGGTCTTCACCCTCCATGCCCCCAGAGGAGTCTGTTGCAGTGCCTAATAATCTGCTCCAAACCTGTGGATTGCAGCCAGTTATCTTTAAAGggcATGGGGATCTGCCACATCTATGTGGGAATACAAGTGAAGTGTTGGTGAACGGGTGGCTGCAGGCATGCTACCGAAGCTCCCAGAACCTCCCACGTGTTTATGAGCAGTATGGAGCCTCCTCCATTCAGCCGCTCTCCACTGAGATGCAGGTCCTGTTGACAGTCTACTATCTGGTACAGCTGGGCCCAGACCAGATACCCCTGATGGAGGACCTGGAGCAGATCCTCATGCGCTCTTGGCGTGAGTCACACCTGACAGAAATCCGTCAGTACCAGCAAAGTCATGCCCAGTTTCCTGCCCCACTGCCTGGACTGGCACAGCCCCTAACCCCTTCTCAGCTCCCTTGGCTGGCCAAGCTGGCCACCAGCTCCTGCGGTGATGCCGTTCTAGTGTTGGACACATCACCCTCATTGTCTGAGGCACTGACAGACACCTTCCGGAGGCTAATAGAGGGCAAGCTTAGTCACACACATTTTGTGGTGATCATTTGCATGGGCAGGAGCCAAGAGACAGAGTCCTGCATAGTGGTTACAGGGAAGCACCAGGCACGAGCACTTGCAGAGAGTATGCTCTCCCcaagtgaatgtgtgagagaaatCAGTCAGGAGCTTTCCTCTGGGATGACTGCTGAATTAGATGCCTATGTTAGCTCCCTAGGTCCAGATGGAAATGTGGAGAGTTTGCTGGAGAAATTCAATGCAGAGACTTACAGCCTTTCAGCTCAGGCACCTGGAAAGGAATGCTCTGCAGAAGCCATGTGTACAGAATATCAGGTAGAGTGGCATGAGATTCGGCCCATTCAGCTAGCAGTGGCACGAAAGCTGTTGTCCCACGTGTGTGCAATTGCTGACTCCAGCACACATAACCTGGATCTTGGATCTTTTGACAAGGTGGAGTTCTTAATCTGTGTGCCTCCTTCTGAGGTGACCTTCCAGCAAGTGGTCCTGCATCTGTGGAACTCAGGGGTCCTTCAAGAATTAGGCATGGACCAGGACTGTTTGTCCCCAAAGGATGCTGAGCAGTATGTGGTAAAATTAGATCAGTCTGCTGCAGCTAAGATCAACGGTCTCATTCAGAAATCAAAGTTGAACCCATATACCCTCTTCATACTGGTGCATGACCATGCACACTGGGACGTGAGCAGTGAAAAGTGTGGGAGGATGGGTGGCTTGTCCAGCTCAGGACTGGTCGACAGTCTGCTGAACTGCAGGCATATTCAAGAGGCACCCAATGTCCTGATTCTCCATGTGACCTCATTCCCCTTTGCCCTGCAGACTCAATACACACGCATCAGCCCCTACAATGAAATCCACTGGCCATCAGCATTCAACaatGATGTGGATCTGTACCATGAGAAAACAAAATACTTTGGCGTGTCCGAGCTGCTGGAATCCACACGATCAGGGAGCGGCCTGCCTCTGCTGCGCTTTGACAGTTCATTTGAGAGCATGGTCACTGCCCTGGAAGAGAGgtTTCCAAAATTGCACAGCTCCGTAATCCGCACCCAGGTGCTTCTCCAGCACTATTCCGTGGCTCTGTTAGCTGCTGCCAGAGGCCAGGTCCAGCTGCAGAAACACACCTCTGTAGAAACGCTGGAGATAGTGCAGTGTCTGCTGGGCTCGACGCGACGCTGCCCCAGCCACCATGGGTACATGCTCCTGCTGCGTATACCTTTCCCATGTCTGGCAGCACTGGCACATCAGCGCCTGTGTCACATACGCGACCGCCTGGGCCTCCACAAGCACTTTGAAATTGTGCTGGGAGACCCCACATCAGGGATCATTGTAGGCAAGCACTTCCTGAGCCAGCTGAGGgtgtggcTGAAGATCCAGGACCCAGACTGGACACCTCGCACATACCTAGATTTAGAGGCTTTGCCCTGCATCCTCATTTTTACTGGTATGGATCCAATGGGGGAGTCATTGCCAAGATCTCTGAAGTACTGTGATGAGCGTGTAATAAGCTGCTGCGCTCTGCAACGCACAGCTCTGGAGCAGGAACTTGGTCTGGCGGCATACTTGGTGCGAGTGGAGGAGCAGAGGCAGCATGGTCCGCGTGTGTCCAGTGACCTGTCTGAGAGCGATCCTGATAAACTCAGCAGCACCGACAACGAGGAGGAAGAGACTGTAGTGGATGTGAGTAGTGCTCTACCTGGCCAGGATCACTCCCAGCAAACCCAGGATGAATTCTCTCCTAACAAACCAAGTCGATCTTCAAAATCCACTTCCCCTGACTCCTTGTCATCTTCACAGACCTCTCCACAGCGCTACTGCTGCTCCTGGGCACGTAACAGAAATAGGCCGCCTGTGGTCCTCCTCCCCAAAGCTTTGTATGATCTGATCACCAGTGTGGATGCCAGTGGCTTGCCCAAGCCCATGTCCTTCCTCCCACACCCATGTGTAGAGTGGGCCAGCTCTTTCAGGCCCCTCCTCAGCAAGATGATGACATGTACAGAGCAGTCTTTGTACTACAGGCAGTGGACTGTGCCCAAACCTCAGCATATGGATAGCAGCAATTGGGCTGAGGGACGCACTGACAACTTTCACCCTCGCAGACTGCTCCTCAGTGGACCACCCCAAGTTGGAAAGACTGGTGCATATCTGCAGTTCCTGGGCATTCTCTCTCGAATGCTGATCAGGCTCATGGAGGTGGACATCTTTGATGAAGAGGACATCAACTGCAATTGCCAGTCTGAGTTGGTGAAGTATCATCAGTCCATTGCATCATGGCCCAATGCTGACACCTTGAGAGGAATGCCTTTTGACTTTACCATCCATGACCCCAAATACGAGGACATCAGTAGCATCTACTCCCCTGACTTTACTCCAAATGTAGAGCgaaacccCCGACGTCAGGAGGACTTGTACCTTCGTCGTCGTACAGCCCGGATAAAACTCTCCAAATATGCAGCATATAATACTTACCATCACTGTGAGCAGTGCCATCAGTACATGGGATTCAACCCTCGATACCAGctGTGTGAGTCTACCCTGCATGCCTTCACCTTCTCTCATCTGTTACTTGGGGAGGAGATACAGCTCTATTTCATTATCCCCAAATCCAAAGAGCATCACTTCTCCTTCAGCCAACCAGGAGGCCAGCTTGAGAGCTTGAGACTGCCCCTTACCTCTGATTGGAATCCTGATTGTATAAAGAGTCCTATATTTACACCCACCACGGGTCGCCATGAGCACGGCCTGTTTAACCTGTATCATGCCATGGACGGAGCCTCCCACCTGCACATCCTGGTCATCAAAGAATACGAGATGGCTGTCTATAAGAAATACTGGCCCAATCACATCATGTTGGTCCTGCCCACCATCTTCAACGGTGCTGGAATAGGAGCAGcacattttctaattaaagaGTTGTCCTATCATAATCTGGAGCTGGAGCGCAGTCGGAGAGTAGAGCATGGCAGTCGTCCTCAGGATGTCTGGCCCTTTATCATCCTGGCAGACGACTCCTGTGTCATGTGGAACAGTGTTGACGCTGACCCCAAGAGtggtACTGCTGGAGCAGAGAGGAATGTGTCACTGAAGCAGGTGCTTCAGCACATGGAATCGTCTCCTGATATCACTCAGTACGGCCTGTGTGGTCTGAGGAAGTGGTCAAGCCGTGGAGCTGGCCCTGGACAAAGGAGAGAGCCCTTCTCACGAGGACACCTACATGACTTCCTGCTCCTCAACGTGGACCTCACTCAGAATGTGCAGTACAATCAAAACCGATTTACATGTGACGATGTAGACTTCAACCTTCGCGTCCACAGCGCTGGCCTTCTAATTTGCCGCTTTAACAACTTTAGTGTGATGAAGAAGCAGATTGCCATTGGAGGATATCGTACATTCATCATCAAGACCAAGATGACTGATGTACCAACCACAGTGCAGCCATCTCAGTACATCTGTGCTCCAGATAGCAAGCACCTGTTCCTGGCTACTCCAGGTCAGCTTCTGCTGGAGAAATACCTCCAACACACAAGTCAGCGACTTTTCCCCCTGAGCACTGGCAATTATAGCCATCCGGTTCTTTCAGTCGACTGCTATCTCAACCTGGGCCCCGAGGTAACAGTGTGTTTTGTCAGTTCAAGACCACACTCCGTCAACATCAGCACAACAGGTTTGCTCTTCAGTGGCCTCCTGCTCTACTTCTGTGACTCTTTTGTCACACCAGGCTTCCTCAAGAAGTTCCAGTTTCTGAAAGGTGCGACTCTGTGCGTAATCTGCCCAAACCGCAGTGCTCTCCGTCAGACAGTGGTGCGGCTTGAGCTGGAGGATGAGTGGCGGTTCCGGCTGAGCGACGAGTTTCAAACTGCCAATGCCAAAGAGGATCAGCCACTCTTCTTTCTCACAGGGACACACATCTGACTCAGTAACTCTGGCCTTACTTTTATGTACatagatgtgtgtatataattaatTAGATATGTACTGTACTCTTGCACTGGTgttactgttttgtttgtgtggtctttctcttctctctgttctcttgcataaaaatgaaatgtgatttttaacagtcttcagtttttatatatatatatatatatatatatatatatatatatatattttcatatatatatatgaaaaattatatttattaccatAACTGTTGTATGACCACAAATTCTGTCTTGATTTTTAtagtgcttttttattattgacaTAATTCGTGCATAGAGAATTGTACAACCCtttgaatgtttttgcaaaGGATATTTAGTAGAGGGcgaatatttttgtatatatttatttagcctGTTCTCTGCTCTTGCTTGCTTTATTAGAAGATGTCTGAGGAGATTGTGtcattgtacagttttagtacCTCACTGCTTCATCTGGTTTGATTTTGTGCTATTTGTACAGTTGTGTGCTATTTGTTCAGTTTTGTGCTATTTGTCCCTTTGATGGACATTTATTGCTATTTGTTCAGTTCTGGCAGGTTAACAGTAGAGGGCACTATAATGCTATCAATTGATATCAAATATCAGTCTAGTTCATCACAAGGTCATTTTGTATAAagaaatgactttattaaaaatgtctataACAATAACCTGTGAAGAACTCATCCACAAAAGAACAGAATGTGTAGTTTCTCACTTTGTTCttgattaatatattaatgatataaatcaCCAAGCACCTGCAAAATCTCTCAAATACCATATTTAGGAGCATATGTTCTGTGCATTGGCCTACTTACTCAAAAAATTGTAGTTTTACTCAATGAAATGATATAGAATTCAGCAGTTTAGAAGGTGGTCACTGATACAGTTGTGGTAGCAAATTCTAATAAAGAGTAAGTGATGAATAATAAATCACTAATACAACTAtcgaaaaaaaaacaacaaaaacctaAGATCTGATGTTATTTCATCATGAGTTCTGTAAATCCCAGCTGACATGCTCAATATCTTTGTACATCATGAATGAGAGCATTTACTTCTTCCATGTAGCAGAGAAATGATACGCACAACACAGGCCAAACATTTGGAAGCAACTTCAAAATATAGCAGACAGTACCATATTAATTCCCATAAACCTCCCATAGATGTATACAGCAATAATTTGATTAACAACTATAACTATACGCTCAACTCTAGAGTGAGAGTACATCACTGCAGAATATTTATTCAAAACATTGGGTTAAACTAGGTATCTAAACATGAATTTCATTGACttcattgtaaaatattttgaaacattaaaaatcaattcagttttatttatatagtgcttttaacaatggacatggtcaaaagcagctttacagaaatctgcgtacaaatttta

Function

symbol description
greb1 Acts upstream of or within convergent extension; pituitary gland development; and somite development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; gonad; midbrain neural keel; neural tube; and paraxial mesoderm. Orthologous to human GREB1 (growth regulating estrogen receptor binding 1).

NR:

description
PREDICTED: protein GREB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201842 False 1342 lncRNA 0.33 1 23148743 23150084
XM_026926020.2 True 7081 mRNA 0.47 32 23148881 23179511

Neighbor

gene id symbol gene type direction distance location
lpin1 lpin1 coding downstream 1005 23113368 ~ 23147738 (-)
LOC113533941 fut8a,LOC108270174,LOC108433921,LOC107752771,LOC107592788,LOC107674109 coding downstream 314751 22767942 ~ 22833992 (-)
LOC113534106 NA coding downstream 411248 22582782 ~ 22737495 (-)
dync1h1 dync1h1 coding downstream 800590 22285848 ~ 22348153 (-)
wdr20a wdr20 coding downstream 873888 22261548 ~ 22274855 (-)
spata17 spata17 coding upstream 55082 23234593 ~ 23265065 (-)
kctd3 kctd3,LOC107590917,LOC107719476,LOC107697722,LOC107733121 coding upstream 542283 23721794 ~ 23735252 (-)
ptpreb ptpreb,LOC108270210,LOC107590916,LOC108444109,LOC107582256 coding upstream 560508 23740019 ~ 23760260 (-)
LOC113534104 klhl28,LOC106581578 coding upstream 600504 23780015 ~ 23792144 (-)
soul3 LOC108269867 coding upstream 647537 23827048 ~ 23836772 (-)
G170558 NA non-coding downstream 42798 23105235 ~ 23105945 (-)
G170477 NA non-coding downstream 156841 22986696 ~ 22991902 (-)
G170478 NA non-coding downstream 162121 22985083 ~ 22986622 (-)
G170476 NA non-coding downstream 164382 22983951 ~ 22984361 (-)
G170461 NA non-coding downstream 165375 22982981 ~ 22983368 (-)
LOC117598237 NA non-coding upstream 22183 23201694 ~ 23229156 (-)
G170782 ush2a,LOC108444108 non-coding upstream 524785 23704296 ~ 23704511 (-)
G170795 NA non-coding upstream 539034 23718545 ~ 23718769 (-)
G170779 NA non-coding upstream 540600 23720111 ~ 23744432 (-)
G170805 NA non-coding upstream 597044 23776555 ~ 23777311 (-)
G170435 NA other downstream 284976 22855494 ~ 22863767 (-)
G170023 NA other downstream 1032867 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 2029118 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 2331304 20813689 ~ 20817439 (-)
G169119 NA other downstream 2582944 20564929 ~ 20565799 (-)
luzp1 luzp1 other upstream 1310727 24490238 ~ 24544079 (-)
G171256 NA other upstream 1601771 24781282 ~ 24926224 (-)
G171569 NA other upstream 2079328 25258839 ~ 25259362 (-)
G171734 NA other upstream 2399428 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 4385747 27565258 ~ 27652301 (-)

Expression


Co-expression Network