G170852


Basic Information

Item Value
gene id G170852
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23894124 ~ 23894355 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU202188
atattgaaatcattctcatggttggatcaggaagctgtcacaagcttgtgatggactttaacaggaaacatggcaagcacatcacaataagacaaacttattaacaaattcaaaaagactggaagtgttgcagaccaactgagaagtggacatccacgaacatccactgaccaAGGCACAACCGATGTGGTGCTGGAGTACACAGTCCCCCATGTATGGAGACtgttgggac

Function

GO: NA

KEGG:

id description
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
TU202188 True 232 lncRNA 0.44 1 23894124 23894355

Neighbor

gene id symbol gene type direction distance location
wars1 wars coding downstream 1485 23884755 ~ 23892639 (-)
LOC113534026 slc25a29,LOC107687216,LOC107557018 coding downstream 17167 23869091 ~ 23876957 (-)
soul3 LOC108269867 coding downstream 57352 23827048 ~ 23836772 (-)
LOC113534104 klhl28,LOC106581578 coding downstream 101980 23780015 ~ 23792144 (-)
ptpreb ptpreb,LOC108270210,LOC107590916,LOC108444109,LOC107582256 coding downstream 133864 23740019 ~ 23760260 (-)
LOC113533700 begain coding upstream 24783 23919138 ~ 23951036 (-)
smyd2a smyd2a,LOC108269891,LOC108433938,LOC107592771,LOC107752785,LOC107697773,LOC107733184,LOC107594786,LOC107674111 coding upstream 109110 24003465 ~ 24028482 (-)
prox1a prox1,prox1a,LOC108433936,LOC107594785,LOC107674077 coding upstream 146390 24040745 ~ 24078739 (-)
LOC117598332 NA coding upstream 392487 24286842 ~ 24291965 (-)
LOC113534192 ect2l coding upstream 412644 24306999 ~ 24320497 (-)
G170788 NA non-coding downstream 114890 23777979 ~ 23779234 (-)
G170805 NA non-coding downstream 116813 23776555 ~ 23777311 (-)
G170779 NA non-coding downstream 149692 23720111 ~ 23744432 (-)
G170795 NA non-coding downstream 175355 23718545 ~ 23718769 (-)
G170782 ush2a,LOC108444108 non-coding downstream 189613 23704296 ~ 23704511 (-)
G170866 NA non-coding upstream 24070 23918425 ~ 23919023 (-)
G170887 NA non-coding upstream 101211 23995566 ~ 23998711 (-)
G170936 NA non-coding upstream 140153 24034508 ~ 24034898 (-)
G171028 NA non-coding upstream 353330 24247685 ~ 24248015 (-)
G171056 NA non-coding upstream 389654 24284009 ~ 24284401 (-)
greb1 greb1 other downstream 714613 23148743 ~ 23179511 (-)
G170435 NA other downstream 1030357 22855494 ~ 22863767 (-)
G170023 NA other downstream 1778248 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 2774499 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 3076685 20813689 ~ 20817439 (-)
luzp1 luzp1 other upstream 595883 24490238 ~ 24544079 (-)
G171256 NA other upstream 886927 24781282 ~ 24926224 (-)
G171569 NA other upstream 1364484 25258839 ~ 25259362 (-)
G171734 NA other upstream 1684584 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 3670903 27565258 ~ 27652301 (-)

Expression


Co-expression Network