G171056


Basic Information

Item Value
gene id G171056
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24284009 ~ 24284401 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU202417
taggggcagtcgtggcctaatggatagagagttggacttgcaacccgaaggtgaacctgaaggttgtgggttcgagtctcaggtccggcagggattgtaggtggggggagtgaatgaccagcgatctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccaggcaccgcagcaaaaaaaggctgcccactgctccgggtgtgtgttcacggtgtgtgtgtgtgtgtgttcactactgtgtgtgtgcacttggatgggttaaatgcagagcacaaattccgagtatgggttaccatacttggccacaagtcacttcacttcattatgctgctactgcaagaaataaaaatataaccaaG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202417 True 393 lncRNA 0.52 1 24284009 24284401

Neighbor

gene id symbol gene type direction distance location
prox1a prox1,prox1a,LOC108433936,LOC107594785,LOC107674077 coding downstream 205270 24040745 ~ 24078739 (-)
smyd2a smyd2a,LOC108269891,LOC108433938,LOC107592771,LOC107752785,LOC107697773,LOC107733184,LOC107594786,LOC107674111 coding downstream 255527 24003465 ~ 24028482 (-)
LOC113533700 begain coding downstream 332973 23919138 ~ 23951036 (-)
wars1 wars coding downstream 391370 23884755 ~ 23892639 (-)
LOC113534026 slc25a29,LOC107687216,LOC107557018 coding downstream 407052 23869091 ~ 23876957 (-)
LOC117598332 NA coding upstream 2441 24286842 ~ 24291965 (-)
LOC113534192 ect2l coding upstream 22598 24306999 ~ 24320497 (-)
ccdc28a ccdc28a coding upstream 42542 24326943 ~ 24331095 (-)
tmem121aa tmem121a,tmem121,LOC108270236,LOC107674105,LOC107592808,LOC107697696,LOC107594772 coding upstream 79601 24364002 ~ 24380106 (-)
tedc1 c9h14orf80 coding upstream 106652 24391053 ~ 24401559 (-)
G171028 NA non-coding downstream 35994 24247685 ~ 24248015 (-)
G170936 NA non-coding downstream 249111 24034508 ~ 24034898 (-)
G170887 NA non-coding downstream 285298 23995566 ~ 23998711 (-)
G170866 NA non-coding downstream 364986 23918425 ~ 23919023 (-)
G170852 NA non-coding downstream 389654 23894124 ~ 23894355 (-)
G171160 NA non-coding upstream 134530 24418931 ~ 24494790 (-)
G171175 kdm1a non-coding upstream 183822 24468223 ~ 24469486 (-)
G171184 NA non-coding upstream 243926 24528327 ~ 24528696 (-)
G171232 NA non-coding upstream 313874 24598275 ~ 24655253 (-)
G171258 NA non-coding upstream 482509 24766910 ~ 24801063 (-)
greb1 greb1 other downstream 1104498 23148743 ~ 23179511 (-)
G170435 NA other downstream 1420242 22855494 ~ 22863767 (-)
G170023 NA other downstream 2168133 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 3164384 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 3466570 20813689 ~ 20817439 (-)
luzp1 luzp1 other upstream 205837 24490238 ~ 24544079 (-)
G171256 NA other upstream 496881 24781282 ~ 24926224 (-)
G171569 NA other upstream 974438 25258839 ~ 25259362 (-)
G171734 NA other upstream 1294538 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 3280857 27565258 ~ 27652301 (-)

Expression


Co-expression Network