G171215


Basic Information

Item Value
gene id G171215
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24759612 ~ 24800058 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU202634
aaaaaaaaaaaaaacacagcatgtCACGACATCAAGAAACTGCAACGTGGAAGGTCTTGAACTCTttcctgtgtgtgaatgtttattGACTATTTCAGAGTGCTGaacctggagactccttccaaaacagTGTACTGGGGACTTGCATTTAATGGGGAGTGTGTGCAGTCACGGTGTGTGTCCTCACCACGGTGTACGCATGCCCTCTCTCCTAACAGGTGCCTCCTACTCCGCCTTCACTGCCCCCTTCTCCTCACAGCTGCCCCACTCCATAAAGCAGTTCCATATCGGTGTGTAATGAGGCAGCCAGACCATTTTCAGCGTCCTGCTGTGGTACTgcagagtcacacacacagctcgcTGTTGTCCGAGTGTGTTAAATGATGACGTGTCTGATTTTTAGCTTGTTTATCATTGTGATGTAGTGGCGAGCTCATTCTAATGTGTCCTCGCCTTCAGCATTCCTCTGGACTGGTGcttgtttaacatttctggaaggagtctccagtgtcagctcttttcCGCCACAGGAACATGTTCAGGACcttacgctttgcagtttcttggtatcatgatgttgtttttttgttttgtttgtttttgttttgttttgttttttgttttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202634 True 626 lncRNA 0.46 2 24759612 24800058

Neighbor

gene id symbol gene type direction distance location
ptafr ptafr coding upstream 198334 24554583 ~ 24561278 (+)
trnar-acg_3 NA coding upstream 329950 24429590 ~ 24429662 (+)
trnah-gug_13 NA coding upstream 330137 24429404 ~ 24429475 (+)
trnae-uuc_2 NA coding upstream 331361 24428180 ~ 24428251 (+)
trnar-acg_2 NA coding upstream 332585 24426955 ~ 24427027 (+)
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding downstream 247612 25047670 ~ 25055250 (+)
ptger2a LOC108269911 coding downstream 314719 25114777 ~ 25132890 (+)
LOC117598271 LOC108191637 coding downstream 371487 25171545 ~ 25173314 (+)
gpr137c gpr137c coding downstream 406778 25206836 ~ 25238591 (+)
gnpnat1 gnpnat1,LOC107693128 coding downstream 581654 25381712 ~ 25388660 (+)
G171121 NA non-coding upstream 268403 24485328 ~ 24491209 (+)
G171135 smndc1 non-coding upstream 309545 24445603 ~ 24450067 (+)
G171021 ect2l non-coding upstream 441546 24317534 ~ 24318066 (+)
G171019 NA non-coding upstream 449646 24309630 ~ 24309966 (+)
G171017 NA non-coding upstream 451283 24307854 ~ 24308329 (+)
G171352 nid2,wu:fb77a09,LOC107564977 non-coding downstream 272688 25072746 ~ 25076475 (+)
G171413 NA non-coding downstream 334542 25134600 ~ 25134885 (+)
G171430 LOC108191637 non-coding downstream 375768 25175826 ~ 25176233 (+)
G171440 NA non-coding downstream 389107 25189165 ~ 25239064 (+)
G171485 NA non-coding downstream 471791 25271849 ~ 25279677 (+)
kdm1a kdm1a other upstream 276758 24463466 ~ 24482854 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 1737217 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 2939553 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 2993239 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 3085151 21669907 ~ 21674461 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 194435 24994493 ~ 25000619 (+)
G171329 NA other downstream 203925 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 376316 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 458753 25258811 ~ 25318277 (+)
LOC113534148 NA other downstream 626833 25426891 ~ 25430929 (+)

Expression


Co-expression Network