G171260


Basic Information

Item Value
gene id G171260
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24813178 ~ 24822221 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU202690
gcaaaacagagacagacacacagacaaacacacacacagagagagagagagagagatacacagagacagacagagactgggatacagacagacacaagcTGACCAGATTCAGTTTCATCAAAATGGAAATAACGGTTTAAATATTTCCACGTTTTCATCCCAATGACAAACCCCCGTCCTGCTCTATCATCTTCAATGCaaatgatctgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtggtgacgtTGATTGGACATGACAGAGAGCAGGGCTCTGATGCACTGGGGGAAATTGCTCACTTTGAATCCTGGAACCAGGCAGTAATTACAGCCAGAAGGGGACGCCAACACTTATACACAAAAATTCatcagaaagaaggaaagaagacaGACAAGGAGGACAAGAATGTGAGCAACATGACAATTTTCTGTGTAAAACCATCATCTGCTTCATGAACGCTACTTTATGCTAACAGCAGCTAATGCTATATAAACGTTATAGCGGTCATCTTAAGCTTGTGAACAAACCAGGATGTAGATTTTCAATTTGAAATAATGAGCTCTACCATCCTCCCAGGTTCTCCGCCATGTACGGGATAAGACCAGGGTGTACAGGCAGCCATGACTGTGAGGGGCAGCATCAGAATGAGTAGTCCAGAAAGCAGCTAATGCTGCATTAGACTAAAACTCATAAAATGGAATTTCAGACCACAGagtagaaaaacaaaacagaaaaaaaaaaaaaaaaatgcaccctCAACTTGGAAAGTCGGGATGGACTCCTCAAcccagagttcagcaagtgacggcaaatcaacatggctgattgtagcatcaacagtaaacaaagtagcacttctttacttttaaataagtGCTACTGTACATAACATTGAGGCGTACATGGCTCTTTCTATGACTTTGCAActcaaaaatgatgtaattccgTCCACCCACTTCCGAGGTAAGTCAAACATATGTTTGTGAGAATGTGAACATAGTGTGCATCTGGGAAAATTACACCCCTGTCAACAGACAGCTGCATCGAACACACAAACATGGGTCAgcccagaacacacacacaaatatgcttAAAAAACCAGTAGGGCTATACTTTCAGGCACTTAACTCCAAGCTGTCCCCTTCCAGAAGCATCAGAAGCAGTTTAGAATCCACTCAGTACAGAGCCACATTTGTCCTGCGATACAGGAAAGACTTTGGAGCCGGTTTAGCATGTGGACaacattcactcatttatttctctGAAAGCATGAGTCAATATGTCCGTTTAAGCCAAAGCAGTGCGCCTGAGTAAACAAGACTGATTTCGAAAacagtaatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgcgtgtgtgtgcatattcCCCCTCTGAGGGCTCGCTGTGAGGAAGGGCAGCCTCTGAGTGACACCGCAGGGATGCACAACAACACGAGGCTAAagagcagagcagagagagCTGCACGCTCAGAGCTCATGGCTAAACATCGGACAAAGATCAATGACCGGCTACACCCCTTAATGCATCCCAGTCCATGCCCTCTTCTTCCCAAACACTTAAAATCCCTACTTCCATTGCAAATTGGTCTCAGGAAtatgacagacagacatgcacacactaaACTCATTAGGGAGTCAGAGAACAGAGCAGGTGGGATGGAGGTCCAACATTCAGTCTCATTTGCAGATGAccaaaggtcaaaggttaaCACCCTACCACTACTAAACCACATGGACAAATATGTTCCTCTGCCTGGGTACTTGTCCTGCTTAACTTGAGACACCCCACCGAGCTCAACACTTGCAGAACCATCGCCTCAAATGGACAGGCTATTTTAAAGTTGTAGTTTAGCTAAGCAGAAACTGTCTGCTGCACTACAGTGCAGCCTTTGTATGTGGGATGATTTTTACTCACTGTATTAAATAGTGTGATACATTTGCCCAAAAGTCAGGACCTGATCCTACCCTTCAATAAGCCTAACCCTAAtccttaaccctaacccactTGTCTTGCACAACTTAAAAGTCTACCCCTAGACGTTCGGTTCAACTCTACCCAGGTTGGGGGATttggatcaggtctgactccactgTCTGGACTATTTGCTCGATTCTACCCAAATTCGACTCAGTCTAGGTAGGAGGATCTGAATCAATTCTGACTCTACCCCCTGGCCTTTTGATTTGACTCCACCCAAGTAAGAGGCTCTGGATCAAGTCTGACTctaccccctggacttttggtacAATACCACCCTGGTAGGAGGATGTGGATCAAGTCAGACTCCACTCTGTGGACTTTTGATTCTACTCCACCCAGGTATGAGGACCAAGAGATCACGTCTGACTTCACGCCCTGGACATTTAGTTTGACTCCATAAAGGTAGGGGGATCTGGATACAGCTCTATTCCCTGAAATTTTGCTTCAACACTGCACAGGCAGAGGGTCTGGATCAGGTTCAGCTCTACCCCCTGGACCTTTGGTTGTGCAGTGAGCAGTACTTGGAAATGGTGGTCAAAGATTATCTGACTTTTGGTGAAGGGTGCAATCATATACTTGATCATATACTTGTTCCACATAACTAGCTCACCATACTTTATTACTTCACATTAGCTACAGCTTTTCAGTCTAGTCAATTAGGCTcctgggcaaccaaaacatgggactgggtagctaataaatttatgatttgtcatgtatatgaatatacatacatattttttcatAGACTAGTCTTCCTAAATTCAAGTAATGAATCTTCAGCAGAAACATTTATTGCACAGACCAAAATCAAATCAACGATtaagtttcattaaaaatgggAATACTACATAACTCGTACTATCTTTAGAAATTGAAATGTGGGTAGGTCAGTAGGTCATCAGTGATATTTGTCTTCTATTCTAACAGCAgtgtgcattaaaaataaacccaGAGCAGTTTGTTAGCAACCACCAGCGTCAATCCTCTTGATCCATTCTCTATTGGTTTTACAAAACATCAAGGCAGATTATTAAGTGGACTCGAGAGTTGGAGGGATGTTCGCTACGctcctaaaaataaaagatgaagcacacacacacaaacacttgagACAGAGGGGGGCTTAGAGTCACAACTAAATGGGTTTTTGTTTATGACTTGTTATCAGCTTAGTGTAGCCAGGGAGAGACAGGGTCTTtgagagaaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctacaCTGATGCAGAAGTGACAGGAAAGAGGACAGAAGTGAGAAAATCTCATTTTAAGCAGTTTTCATCTAAAAGAAGACTCTCACTGCTAGTGCAAAAAAAGGCAGTCAATTTTtctccctttaaaaaaaattcccctcTAGTCGAAACACTCCTCTCCATCATGGCCCTTTCAAACCCACGTCCCTGCACACTTCATCACTCTCACCTCTCGTGCCTGTGTTGCGCTTCTGCAAGATCTGTCTTACCTACTGAATGCTGGAAGTTTCACattaacacaccacacactaacaaaaaaaaactaaatctaTGAACctgtgagagagaatgaaagaacaCGTGAAAGAGTGTGCAAAAGGAGTCAAGGAAAGGTGAAGAGGTGACACGCTATTGAGTGGTCAAGCTAATTACTAATTAACCTGAGCTAAGTAATTTAGTGGCCTGACTCAGAGAGACGCAGACATAAGAAGCAAggaaaatggatgaataaagaaggaaaagatGGGAAATAAAGGTGCTATTTTGGTGTTATTcatccttttcctttttctcatttttagaAAAGCGGCCTTCAATGGCAGATTGTCAGCAGGAACAATAGTCCCGTCTTTTGAATCGCttcataccacagcgctgttaaattctcaattctaaCCGTCAATCTGattaatcagaaggtgttggtttgttttctataacagcagctctcacagtagCTCCAAGTGCAaggtttaatacattttaatacatattctatagtaacaacttacacaaggacttgtgtaagtgtgtgtaattgttgatttggcttTCTttgagtgtcagcactttgcaacagtcagaagGGACGCTGTAACAACGTTTTCCACCACAgcaaagttttcaggacagaggagtttatgctttacGATTTCTCAATAACAAGACgagccacattttttttttgaagaaaaaaagatgcttgtcaggaaacaaacatttatagctgttataataaagCGATAACAGGAAGCAGCTTGTCTGATGGACcctctgcaacattaaatgcaactataaatggacaaaatgtcATTCTTTGTCACTGCATTCTGGCTTTGCATCAGGGCACCACCACGccactgattaatttcctactAATTCCTATTAATTTCCTATTAATTAACTGCactccttccacacacacacacacacacacacgttttattgtcttttatgGCTTCCTTCCTAATCCCAGAAAGATTGACAAGGACAAAACCTAGGATGAAACAATTCCAAATAAATCATCAAGAGCTCATGTGTAGACGGAAGCTGATACTTTACAGGAAAAAagagagagagagagagagagagagacggcatGCACTCCATTGTGTGAGAGGTCACAGGAAATGACATCGTGTTTAATCTTGACACCTCACCCACATTTCCTTTCTGCCGTGACAGCATTTAATTGAAGATGAGACTTATCAGATTAAGCATCTCgctactcaaaaaaaaaaaaaaaaaaaaaaaaaaaatccctcgcTCGAATACGTGTGCAGAGATGCCGGTGAGGGACTCGGAGCCGGGGCACGATGGCAAGACGAGTTATTTTAGAGAAATTGACGTGACGCAGTGCAGCGAGGGAGCGAGGAAATCTAATTAGCCATTACGGATGGGGAGGGGAGCGAGGATCAGAGTTGCACACACAGATGGCACGGAGGAACTGAGAGACAAAAGGAGCGGTGGACTGAAGGGAAGAGGATACACGTCTCTCGTCTCCTTCCTTCACGGCGGCGGCGGCGGACggaaagaaaacatttagtCTGGAAGAGCGAGCGAGATTCTCGCTTTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202690 True 5130 lncRNA 0.43 3 24813178 24822221

Neighbor

gene id symbol gene type direction distance location
tmem30b LOC108269804 coding downstream 350242 24454401 ~ 24462936 (-)
smndc1 smndc1,LOC107671123,LOC107668620,LOC107552887 coding downstream 363216 24443797 ~ 24449962 (-)
samd8 LOC108269803 coding downstream 372924 24431395 ~ 24440254 (-)
dnal1 dnal1 coding downstream 404396 24403823 ~ 24408782 (-)
tedc1 c9h14orf80 coding downstream 411619 24391053 ~ 24401559 (-)
cep295 LOC108269817 coding upstream 151818 24974039 ~ 24991828 (-)
si:ch211-266o15.1 LOC108269816 coding upstream 187562 25009783 ~ 25046786 (-)
nid2a nid2,wu:fb77a09 coding upstream 234143 25056364 ~ 25106759 (-)
txndc16 txndc16 coding upstream 360195 25182416 ~ 25206473 (-)
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding upstream 417865 25240086 ~ 25252303 (-)
G171258 NA non-coding downstream 12115 24766910 ~ 24801063 (-)
G171232 NA non-coding downstream 157925 24598275 ~ 24655253 (-)
G171184 NA non-coding downstream 284482 24528327 ~ 24528696 (-)
G171160 NA non-coding downstream 318388 24418931 ~ 24494790 (-)
G171175 kdm1a non-coding downstream 343692 24468223 ~ 24469486 (-)
G171381 NA non-coding upstream 185878 25008099 ~ 25009389 (-)
G171542 NA non-coding upstream 439387 25261608 ~ 25262527 (-)
G171545 NA non-coding upstream 442147 25264368 ~ 25265970 (-)
G171543 NA non-coding upstream 445681 25267902 ~ 25271762 (-)
G171572 NA non-coding upstream 463821 25286042 ~ 25286781 (-)
luzp1 luzp1 other downstream 269099 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 1633667 23148743 ~ 23179511 (-)
G170435 NA other downstream 1949411 22855494 ~ 22863767 (-)
G170023 NA other downstream 2697302 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 3693553 21088303 ~ 21119625 (-)
G171569 NA other upstream 436618 25258839 ~ 25259362 (-)
G171734 NA other upstream 756718 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2743037 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2849402 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 3077261 27899482 ~ 27910890 (-)

Expression


Co-expression Network