Gene
RNA
| Item | Value |
|---|---|
| gene id | G171329 |
| gene name | NA |
| gene type | unknown |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 25003983 ~ 25007766 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU202767 | True | 3784 | TUCP | 0.44 | 1 | 25003983 | 25007766 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| qkia | qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620 | coding | upstream | 142951 | 24783003 ~ 24861032 (+) |
| pacrg | pacrg,LOC107695182,LOC107697704,LOC107583491,LOC107590953 | coding | upstream | 236567 | 24629095 ~ 24767416 (+) |
| ptafr | ptafr | coding | upstream | 442705 | 24554583 ~ 24561278 (+) |
| trnar-acg_3 | NA | coding | upstream | 574321 | 24429590 ~ 24429662 (+) |
| trnah-gug_13 | NA | coding | upstream | 574508 | 24429404 ~ 24429475 (+) |
| rtraf | c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 | coding | downstream | 39904 | 25047670 ~ 25055250 (+) |
| ptger2a | LOC108269911 | coding | downstream | 107011 | 25114777 ~ 25132890 (+) |
| LOC117598271 | LOC108191637 | coding | downstream | 163779 | 25171545 ~ 25173314 (+) |
| gpr137c | gpr137c | coding | downstream | 199070 | 25206836 ~ 25238591 (+) |
| gnpnat1 | gnpnat1,LOC107693128 | coding | downstream | 373946 | 25381712 ~ 25388660 (+) |
| G171215 | NA | non-coding | upstream | 203925 | 24759612 ~ 24800058 (+) |
| G171121 | NA | non-coding | upstream | 512774 | 24485328 ~ 24491209 (+) |
| G171135 | smndc1 | non-coding | upstream | 553916 | 24445603 ~ 24450067 (+) |
| G171021 | ect2l | non-coding | upstream | 685917 | 24317534 ~ 24318066 (+) |
| G171019 | NA | non-coding | upstream | 694017 | 24309630 ~ 24309966 (+) |
| G171352 | nid2,wu:fb77a09,LOC107564977 | non-coding | downstream | 64980 | 25072746 ~ 25076475 (+) |
| G171413 | NA | non-coding | downstream | 126834 | 25134600 ~ 25134885 (+) |
| G171430 | LOC108191637 | non-coding | downstream | 168060 | 25175826 ~ 25176233 (+) |
| G171440 | NA | non-coding | downstream | 181399 | 25189165 ~ 25239064 (+) |
| G171485 | NA | non-coding | downstream | 264083 | 25271849 ~ 25279677 (+) |
| cx28.6 | LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 | other | upstream | 3364 | 24994493 ~ 25000619 (+) |
| kdm1a | kdm1a | other | upstream | 521129 | 24463466 ~ 24482854 (+) |
| LOC113533992 | gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 | other | upstream | 1981588 | 22861807 ~ 23022395 (+) |
| G169692 | LOC107990201 | other | upstream | 3183924 | 21819281 ~ 21820059 (+) |
| im:7136021 | LOC108270035 | other | upstream | 3237610 | 21760771 ~ 21766373 (+) |
| LOC117598238 | LOC108191637 | other | downstream | 168608 | 25176374 ~ 25177897 (+) |
| samd4a | samd4a | other | downstream | 251045 | 25258811 ~ 25318277 (+) |
| LOC113534148 | NA | other | downstream | 419125 | 25426891 ~ 25430929 (+) |
| nrxn3a | nrxn3,LOC107583487 | other | downstream | 2148577 | 27156343 ~ 27467566 (+) |
| trnak-uuu_7 | NA | other | downstream | 2717441 | 27725207 ~ 27725279 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| mexican tetra (Astyanax mexicanus) | G87375 | LOC107679998,LOC107564960 | non-coding | NC_035905.1 | CM008308.1 | 41446143 ~ 41452705 (-) |
