G171352 (nid2,wu:fb77a09,LOC107564977)


Basic Information

Item Value
gene id G171352
gene name nid2,wu:fb77a09,LOC107564977
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25072746 ~ 25076475 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU202792
CTGATGTGTTTACCTGGAGCATCACAGTTGGTAGGTGGGGTACCAGGTGGGGTACGGGTGCCTGCTCTTTCCTGCCCACTACTGTCCACACACCAGCAGTGTCCTGTAGAGCCATGGCACTGTTGAGGTCTGTAGCGACCCTCCTCGTCACACTGAGGGACGAAGGCTCCTACTATGGGCAAACCATCCGCTCTTCTCTGTATGCTGTCCCTGTGCTGCTCACACCGAGTCTTAGGACGTTCTGAATGAATTatgaaaaaacagagacagag
>TU202793
CAAAAGTCAATATCTGCACTGAATATTAATTCTGCTGAGCTGATGTGTTTACCTGGAGCGTCACAGTTGGTAGGTGGGGTACCAGGTGGGGTACGGGTGCCTGCTCTTTCCTGCCCACTACTGTCCACACACCAGCAGTGTCCTGTAGAGCCATGGCACTGTTGAGGTCTGTAGTGACCCTCCTCATCACAGTCAGGGATGAAGGCTCCTACTATGGGCAATCCGTCCACTGTTTTCTGTATGCTGTCCCTGTGCTGCTCACACCGAGTCTTAGGACGT
>TU202796
CAAAAGTCAATATCTGCACTGAATATTAATTCTGCTGAGCTGATGTGTTTACCTGGAGCGTCACAGTTGGTAGGTGGGGTACCAGGTGGGGTACGGGTGCCTGCTCTTTCCTGCCCACTACTGTCCACACACCAGCAGTGTCCTGTAGAGCCATGGCACTGTTGAGGTCTGTAGTGACCCTCCTCATCACAGTCAGGGATGAAGGCTCCTACTATGGGCAATCCGTCCACTGTTTTCTGTATGCTGTCCCTGTGCTGCTCACACCGAGTCTTAGGACGT
>TU202798
CTGATGTGTTTACCTGGAGCATCACAGTTGGTAGGTGGGGTACCAGGTGGGGTACGGGTGCCTGCTCTTTCCTGCCCACTACTGTCCACACACCAGCAGTGTCCTGTAGAGCCATGGCACTGTTGAGTTCTGTAGTGACCCTCCTCGTCACACTGAGGGATGAAGGCTCCTACTATGGGCAAACCATCCACTCTTCTCTGTATGCTGTCCCTGTGCTGCTCACACCGAGTCTTAGGACGTTCTG
>TU202805
CAAAAGTCAATATCTGCACTGAATATTAATTCTGCTGAGCTGATGTGTTTACCTGGAGCGTCACAGTTGGTAGGTGGGGTACCAGGTGGGGTACGGGTGCCTGCTCTTTCCTGCCCACTACTGTCCACACACCAGCAGTGTCCTGTAGAGCCATGGCACTGTTGAGTTCTGTAGTGACCCTCCTCGTCACACTGAGGGATGAAGGCTCCTACTATGGGCAAACCATCCACTCTTCTCTGTATGCTGTCCCTGTGCTGCTCACACCGAGTCTTAGGACGTTCTG
>TU202808
CTGGAGCGTCACAGTTGGTAGGTGGGGTACCAGGTGGGGTACGGGTGCCTGGTCTTTCCTGCCCACTACTGTCCACACACCAGCAGTGTCCTGTAGAGCCATGGCACTGTTGAGGTCTGTAGTGACCCTCCTCGTCACACTCAGGGATGAAGGCTCCTACTATGGGCAAACCGTCCGTTCTTCTCTGTATGCTGTCCCTGTGCTGCTCACACCGAGTCTTAGGACGTTCT

Function

symbol description
nid2 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in cell-matrix adhesion. Located in basement membrane and plasma membrane. Colocalizes with collagen-containing extracellular matrix.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202792 False 272 lncRNA 0.54 2 25073278 25074042
TU202793 False 279 lncRNA 0.52 2 25072746 25075489
TU202796 False 279 lncRNA 0.52 3 25072746 25075489
TU202798 False 244 lncRNA 0.55 2 25073278 25075000
TU202805 True 283 lncRNA 0.52 2 25072746 25075000
TU202808 False 230 lncRNA 0.57 2 25074277 25076475

Neighbor

gene id symbol gene type direction distance location
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding upstream 17496 25047670 ~ 25055250 (+)
qkia qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620 coding upstream 211714 24783003 ~ 24861032 (+)
pacrg pacrg,LOC107695182,LOC107697704,LOC107583491,LOC107590953 coding upstream 305330 24629095 ~ 24767416 (+)
ptafr ptafr coding upstream 511468 24554583 ~ 24561278 (+)
trnar-acg_3 NA coding upstream 643084 24429590 ~ 24429662 (+)
ptger2a LOC108269911 coding downstream 38302 25114777 ~ 25132890 (+)
LOC117598271 LOC108191637 coding downstream 95070 25171545 ~ 25173314 (+)
gpr137c gpr137c coding downstream 130361 25206836 ~ 25238591 (+)
gnpnat1 gnpnat1,LOC107693128 coding downstream 305237 25381712 ~ 25388660 (+)
si:ch211-266g18.6 LOC107680798 coding downstream 392983 25469458 ~ 25489162 (+)
G171215 NA non-coding upstream 272688 24759612 ~ 24800058 (+)
G171121 NA non-coding upstream 581537 24485328 ~ 24491209 (+)
G171135 smndc1 non-coding upstream 622679 24445603 ~ 24450067 (+)
G171021 ect2l non-coding upstream 754680 24317534 ~ 24318066 (+)
G171019 NA non-coding upstream 762780 24309630 ~ 24309966 (+)
G171413 NA non-coding downstream 58125 25134600 ~ 25134885 (+)
G171430 LOC108191637 non-coding downstream 99351 25175826 ~ 25176233 (+)
G171440 NA non-coding downstream 112690 25189165 ~ 25239064 (+)
G171485 NA non-coding downstream 195374 25271849 ~ 25279677 (+)
G171522 NA non-coding downstream 312297 25388772 ~ 25389166 (+)
G171329 NA other upstream 64980 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 72127 24994493 ~ 25000619 (+)
kdm1a kdm1a other upstream 589892 24463466 ~ 24482854 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 2050351 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 3252687 21819281 ~ 21820059 (+)
LOC117598238 LOC108191637 other downstream 99899 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 182336 25258811 ~ 25318277 (+)
LOC113534148 NA other downstream 350416 25426891 ~ 25430929 (+)
nrxn3a nrxn3,LOC107583487 other downstream 2079868 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 2648732 27725207 ~ 27725279 (+)

Expression


Co-expression Network