G171381


Basic Information

Item Value
gene id G171381
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25008099 ~ 25009389 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU202841
ATAATCGCAGGCTTGATCTCGCACAGAAGAGTTCCTTCCAAACCGTGGATCCATTGCGCAATTCCATACATGACTTTTATGCAtgcaggtttgcaaaatggtaTGCACGAGGTTCATCCATTAGCtgtgttttatcatttttcctCTGACACCAACACGTGAGGTGAAGAACAATACTTTTTGGCCATCATTAGCCAAattcagtaaatgtaaatgtcggCGTGCAGCGCCAAGAGCGGGTAGTTTCCACacctgatgtgttttttttgtaagtgaGCCAGACCACTGTTTTCAAGAGAACCAGGAATCAGTTCTCAGGATTACTACTATAcgaaaaacagctttcacactccATCAAATGCAGCCAACTCTGCAAAAAGCACAAGTGAGAAAACACCAATTTgtggatttttcatttttaaattttacatttgcCTTATACATATTTTGGCTTTGAAGACTTGCTTGTTACCTTTGAACAGTTTGACAGAATATTCACATACAACATCGTAGTTCTTAagattgtgattttattttaataattcttGCCTTCTTAAATTAGGAGGACTTGTGTTCTTAGTGTCCTTTTTTGATTCAGTCACAGGCTTCCTTGCTTGTTATGTCAGATCGCATGGCGTTTTTTGCATAACTGAGCCAAAAGATTAAAGCTGTGGTGCGCATACTTGTTTTAGTTTTAAGCAGCAAGGTCCACATGGTCACCAGAGAGGCCAAATTAGTTCTGCAATGTTTATCCACAAGATTATGCAGATATTTGCACAGATACATCCAGTGCCTGCCTACGATGTAAGGCCAATTGTCATTTGCTACCATGGTAACCGAGTGGAGGGCTTTTGCTTGAGCGCTGTGCTGGATTCTGCAGGTTTTGAGACAAGAGCAACAAAAGTGGTAAGGATGCAGACAGTCATcattatttcagtattaaaagtataaaaactTACTGCTCTTAAtaatgtgacatttttattttttaccttgCAAAGTCAGGCAAGGATATCTTGGATAAGTCGTACTTTGATCTGCGTATGTCCTAGACAGCTTTTTTGCCTCCCGAATCTGCAAAGATGCTCATAGAGATGTatgtatttctgtgtttttgaccTGTCACGATATACTGAAACACTATGGTATAACTCATCACCTAATCACGTTTGTGTtcagcagaagtgtgtgtgggtgtgtgcgcaGGGCACAAGAGTTGTCAATTGAGAGcttttgagagtgtgtgtgtgggtgcagaGTAGGAAAGCAACAAAGGCCAGCTAACAAAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202841 True 1291 lncRNA 0.40 1 25008099 25009389

Neighbor

gene id symbol gene type direction distance location
cep295 LOC108269817 coding downstream 16271 24974039 ~ 24991828 (-)
tmem30b LOC108269804 coding downstream 545163 24454401 ~ 24462936 (-)
smndc1 smndc1,LOC107671123,LOC107668620,LOC107552887 coding downstream 558137 24443797 ~ 24449962 (-)
samd8 LOC108269803 coding downstream 567845 24431395 ~ 24440254 (-)
dnal1 dnal1 coding downstream 599317 24403823 ~ 24408782 (-)
si:ch211-266o15.1 LOC108269816 coding upstream 394 25009783 ~ 25046786 (-)
nid2a nid2,wu:fb77a09 coding upstream 46975 25056364 ~ 25106759 (-)
txndc16 txndc16 coding upstream 173027 25182416 ~ 25206473 (-)
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding upstream 230697 25240086 ~ 25252303 (-)
gch1 gch1,LOC107583460,LOC107564951,LOC107693131,LOC107723641,LOC107751761,LOC107680005 coding upstream 311121 25320510 ~ 25335259 (-)
G171257 NA non-coding downstream 92949 24783017 ~ 24915150 (-)
G171260 NA non-coding downstream 185878 24813178 ~ 24822221 (-)
G171258 NA non-coding downstream 207036 24766910 ~ 24801063 (-)
G171232 NA non-coding downstream 352846 24598275 ~ 24655253 (-)
G171184 NA non-coding downstream 479403 24528327 ~ 24528696 (-)
G171542 NA non-coding upstream 252219 25261608 ~ 25262527 (-)
G171545 NA non-coding upstream 254979 25264368 ~ 25265970 (-)
G171543 NA non-coding upstream 258513 25267902 ~ 25271762 (-)
G171572 NA non-coding upstream 276653 25286042 ~ 25286781 (-)
G171570 NA non-coding upstream 277763 25287152 ~ 25289502 (-)
G171256 NA other downstream 81875 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 464020 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 1828588 23148743 ~ 23179511 (-)
G170435 NA other downstream 2144332 22855494 ~ 22863767 (-)
G170023 NA other downstream 2892223 22115565 ~ 22115876 (-)
G171569 NA other upstream 249450 25258839 ~ 25259362 (-)
G171734 NA other upstream 569550 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2555869 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2662234 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2890093 27899482 ~ 27910890 (-)

Expression


Co-expression Network