G171413


Basic Information

Item Value
gene id G171413
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25134600 ~ 25134885 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU202903
GGAAGGttgtaaattaactaatttctcTATCCAATGCTGTCACGTGACAAAAGAACGAACGACTCGAAAGACtcgagagatgaactaatcaattctctttccggcTCACACTGCATTGATTAAGCTTATGGGGCTGTCACATGATGAACGAACGACTCAGACTCGAAACAGGTGAACTAATTCCAGTACAGAACCTATAGGATGTTGCGCATGCGCGACTGAACGAATCACTCCACGAGACGACTCGTTCTTCCCGAGTCACATTAAAGATTCATTCAAAATGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202903 True 286 lncRNA 0.43 1 25134600 25134885

Neighbor

gene id symbol gene type direction distance location
ptger2a LOC108269911 coding upstream 1710 25114777 ~ 25132890 (+)
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding upstream 79350 25047670 ~ 25055250 (+)
qkia qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620 coding upstream 273568 24783003 ~ 24861032 (+)
pacrg pacrg,LOC107695182,LOC107697704,LOC107583491,LOC107590953 coding upstream 367184 24629095 ~ 24767416 (+)
ptafr ptafr coding upstream 573322 24554583 ~ 24561278 (+)
LOC117598271 LOC108191637 coding downstream 36660 25171545 ~ 25173314 (+)
gpr137c gpr137c coding downstream 71951 25206836 ~ 25238591 (+)
gnpnat1 gnpnat1,LOC107693128 coding downstream 246827 25381712 ~ 25388660 (+)
si:ch211-266g18.6 LOC107680798 coding downstream 334573 25469458 ~ 25489162 (+)
cx40.8 LOC108269439,LOC108443405,LOC103044257 coding downstream 355390 25490275 ~ 25494255 (+)
G171352 nid2,wu:fb77a09,LOC107564977 non-coding upstream 58125 25072746 ~ 25076475 (+)
G171215 NA non-coding upstream 334542 24759612 ~ 24800058 (+)
G171121 NA non-coding upstream 643391 24485328 ~ 24491209 (+)
G171135 smndc1 non-coding upstream 684533 24445603 ~ 24450067 (+)
G171021 ect2l non-coding upstream 816534 24317534 ~ 24318066 (+)
G171430 LOC108191637 non-coding downstream 40941 25175826 ~ 25176233 (+)
G171440 NA non-coding downstream 54280 25189165 ~ 25239064 (+)
G171485 NA non-coding downstream 136964 25271849 ~ 25279677 (+)
G171522 NA non-coding downstream 253887 25388772 ~ 25389166 (+)
G171523 NA non-coding downstream 254481 25389366 ~ 25389505 (+)
G171329 NA other upstream 126834 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 133981 24994493 ~ 25000619 (+)
kdm1a kdm1a other upstream 651746 24463466 ~ 24482854 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 2112205 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 3314541 21819281 ~ 21820059 (+)
LOC117598238 LOC108191637 other downstream 41489 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 123926 25258811 ~ 25318277 (+)
LOC113534148 NA other downstream 292006 25426891 ~ 25430929 (+)
nrxn3a nrxn3,LOC107583487 other downstream 2021458 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 2590322 27725207 ~ 27725279 (+)

Expression


Co-expression Network