G171522


Basic Information

Item Value
gene id G171522
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25388772 ~ 25389166 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203019
ATCAGCCAAAAAAAACGTTAAAGCTGGGTTACAAATTCCAGAGACTCTGGCGAGCTCACGTGCAGAACTGGaagctgaatgaaatgaatttttgGGTTTCTCTGTCTGACTGTACCGCTAGACATGTGCCGATATAGTTTCCTATCACGGTAATCTCTTAATCATTGCTCACGGTTTACAAGatcatgatatttaaaaaaacaaataaataaaataaaaaaaattagtgctCATTTTTGCATCCATGATAACACTACTACTGTGCATGCTGAGTATCAGTTATATATTGAATATTGGCACATGTCTAGTCCTGATAggaattttctttattatttattagcataATGTATACCAGAGAAAGTGGCAAATAAACtgtttacaaataaatgttccaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203019 True 395 lncRNA 0.34 1 25388772 25389166

Neighbor

gene id symbol gene type direction distance location
gnpnat1 gnpnat1,LOC107693128 coding upstream 112 25381712 ~ 25388660 (+)
gpr137c gpr137c coding upstream 150181 25206836 ~ 25238591 (+)
LOC117598271 LOC108191637 coding upstream 215458 25171545 ~ 25173314 (+)
ptger2a LOC108269911 coding upstream 255882 25114777 ~ 25132890 (+)
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding upstream 333522 25047670 ~ 25055250 (+)
si:ch211-266g18.6 LOC107680798 coding downstream 80292 25469458 ~ 25489162 (+)
cx40.8 LOC108269439,LOC108443405,LOC103044257 coding downstream 101109 25490275 ~ 25494255 (+)
fabp7a fabp7a,LOC108443406,LOC108269522,LOC107693085,LOC107723744,LOC107583466,LOC107751758 coding downstream 115316 25504482 ~ 25506510 (+)
marcksb LOC108270344 coding downstream 189727 25578893 ~ 25582638 (+)
rragd LOC108270433,LOC108435430,LOC107755772,LOC107693082,LOC107583676,LOC107751745 coding downstream 295683 25684849 ~ 25704808 (+)
G171485 NA non-coding upstream 109095 25271849 ~ 25279677 (+)
G171440 NA non-coding upstream 149708 25189165 ~ 25239064 (+)
G171430 LOC108191637 non-coding upstream 212539 25175826 ~ 25176233 (+)
G171413 NA non-coding upstream 253887 25134600 ~ 25134885 (+)
G171352 nid2,wu:fb77a09,LOC107564977 non-coding upstream 312297 25072746 ~ 25076475 (+)
G171523 NA non-coding downstream 200 25389366 ~ 25389505 (+)
G171619 NA non-coding downstream 128950 25518116 ~ 25522689 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding downstream 198323 25587489 ~ 25592749 (+)
G171684 NA non-coding downstream 293228 25682394 ~ 25778732 (+)
LOC117598331 NA non-coding downstream 1236774 26625940 ~ 26686726 (+)
samd4a samd4a other upstream 70495 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 210875 25176374 ~ 25177897 (+)
G171329 NA other upstream 381006 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 388153 24994493 ~ 25000619 (+)
kdm1a kdm1a other upstream 905918 24463466 ~ 24482854 (+)
LOC113534148 NA other downstream 37725 25426891 ~ 25430929 (+)
nrxn3a nrxn3,LOC107583487 other downstream 1767177 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 2336041 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 2638834 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 3472296 28861462 ~ 28935700 (+)

Expression


Co-expression Network