G171542


Basic Information

Item Value
gene id G171542
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25261608 ~ 25262527 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203040
CTAGACCACTAAAGACAGAAGTtttgagaagtttttttttttttttaacaatttggTCTGGTTACAACTATTCTATTTACCATatttggtatttggaggaaaTACAGTATGAAGCCAGTGAGACATTACAAACTTAAACATTTAGAAACCTTGAATGCAtctgcctatctgtctttaagtgtgtgtaacagtttgCCCcatgccattattattattatgccattGATGAGACCATGTGACTGTGCATAGCACAGCCCTAATATCTTAATTATCGAGCTATTAATAGTTGACCAGCCATCACTGAGAATCTGACGATTGTTAGATAATTTCATACTAATATCAATACAGCTGCTTTTCATAGTAAGAGTAGCAATATGAAGATTCTGAGAAGATTCGACTGACCTGGGTTGTTGGCCTCCACTTCAAGAACGTGCAGCTCCGTGCACTCAGCTAACGAATGCTCCAGACAGAGCTGCAGGAACCGAGCCTGGGTCCGACTCACCCGCTTCAACAGTGACAGCAGAGCCACGGTCTGCTCGCACTCGTTCCAGCCCTTAAACCAGCTGGCCAAGACACCCACCTGGTCACGAAACATCATGGTCTGGTGGGCCGCACTTGAAGCCTGCGACGTGGGTTTAATGAGAGAGATGGATGTATTCAATGTGGTGGGAATTGCTTCACAGACGAATCCTGGAAAAGCTCTTTAAAAATTTATCTGCTCTGAAGTCTTGGGGTCAAGCGTGGTTAATGAGGACTCAAGTGTTGTCTCGTCATTCTTTGTTatgttatgatatgatatgagaTGGTGTTCTCCTCCAAGATTTTGGCAATGAGTGATAACCCAACAAAGACACTCCGTGATGGCTGTCCTGCGTTAATGTAGATTTACTGCTGCTGGCATTTTTCACCAGGAACACCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203040 True 920 lncRNA 0.43 1 25261608 25262527

Neighbor

gene id symbol gene type direction distance location
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding downstream 9305 25240086 ~ 25252303 (-)
txndc16 txndc16 coding downstream 55135 25182416 ~ 25206473 (-)
nid2a nid2,wu:fb77a09 coding downstream 154849 25056364 ~ 25106759 (-)
si:ch211-266o15.1 LOC108269816 coding downstream 214822 25009783 ~ 25046786 (-)
cep295 LOC108269817 coding downstream 269780 24974039 ~ 24991828 (-)
gch1 gch1,LOC107583460,LOC107564951,LOC107693131,LOC107723641,LOC107751761,LOC107680005 coding upstream 57983 25320510 ~ 25335259 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 74019 25336546 ~ 25361861 (-)
socs4 socs4,LOC108270091,LOC107564995 coding upstream 106978 25369505 ~ 25371805 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding upstream 127404 25389931 ~ 25396747 (-)
ros1 NA coding upstream 135563 25398090 ~ 25418463 (-)
G171381 NA non-coding downstream 252219 25008099 ~ 25009389 (-)
G171257 NA non-coding downstream 346458 24783017 ~ 24915150 (-)
G171260 NA non-coding downstream 439387 24813178 ~ 24822221 (-)
G171258 NA non-coding downstream 460545 24766910 ~ 24801063 (-)
G171232 NA non-coding downstream 606355 24598275 ~ 24655253 (-)
G171545 NA non-coding upstream 1841 25264368 ~ 25265970 (-)
G171543 NA non-coding upstream 5375 25267902 ~ 25271762 (-)
G171572 NA non-coding upstream 23515 25286042 ~ 25286781 (-)
G171570 NA non-coding upstream 24625 25287152 ~ 25289502 (-)
G171573 samd4a non-coding upstream 28899 25291426 ~ 25291938 (-)
G171569 NA other downstream 2246 25258839 ~ 25259362 (-)
G171256 NA other downstream 335384 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 717529 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2082097 23148743 ~ 23179511 (-)
G170435 NA other downstream 2397841 22855494 ~ 22863767 (-)
G171734 NA other upstream 316412 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2302731 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2409096 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2636955 27899482 ~ 27910890 (-)
G172919 NA other upstream 2649710 27912237 ~ 27912544 (-)

Expression


Co-expression Network