G171545


Basic Information

Item Value
gene id G171545
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25264368 ~ 25265970 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203043
TTATGCTATACacatattatgatattatgcTATTTGTTCTATTatgccatacacacacacactcaatttaACCCATAACCCATATGTTAAAAGAACATTCTGTCTTTATTCAATAATTATGTATGCAGACAAAAACTCCTCAGTGTAAGACACGAAAGCTTCCAGTGCTTTTTTGGTTTCTCTTTAATATTCAGCCATCAAGTTGAAATAACATATTATTCAGTGAACACGTAAACACTTAGCTCAAAGTCACCATCAGTGTGTTGTGGGATGCTGAGACGAACAGCTAATACATTGCATCACTTTGGGTCAGAGAACAAGGCTGCTTCTTCACAGACTCGAATAAGTAGGTCATTGTGGATTCCTTTCATTAGTACAGTTCCTTCCAAATAGTTGTGCCTTTCCACTCGCACTTCCAGCTGAAAGTTAACCAGCTGTAAGCGCCACTCTCAGGacctttttaacattttagtactattaggttaaaaaaaaaaagaactatagTAGTAGTTTAATCTGTTGACCAAATactcattaacatgacaaagtgtactgtatatttaaacatattttgcaTGAAAAATGAAGAACTGCAAAATGTAacacagtgttagtgttacttttttttctagatgAACCAAAACTGGGATGTTCAAatccaaaaataatattaaagttCTTTGAAGAGTAACACATCCTTTCAgtgcaaatttaatacatgcctACATTAGTACAGAAAATGTGTACACTTTTAGCTTATAGTAGCTAAAAGTGATTGTAATCATtgtgatactgtgataaattatgttatGCTACATTTTCTGGAAGTATCTGGGCATCACTTTGGTACCTCATGTtccttgttaaatattttttaataatgtggcCTTACCGTTTTGCTGGCGATATTTTTGCGAatctaaatattgtgatatccTGTGAGAGGTGGTTAAAATACCAAAATtttttactcaagtaaaagtgcagttaCTTATCTAAATAAATACTCAGGTAAAAGTTGAAGTGTGGTTTCAAATTTTTTACTCAAGTTAAAGTAGGAAAGAATACAGTCttaacttaaaatatgaaattaaaactaCAAGCAagattcataaaataataaattttctGCCTCACATCACACAGTTACTTATGGTAAATTAGTGCTTCTTTCACCAAAGTACAtgaaaaacattagctaaggctaactaacaacagcttttTTGCTAACTTCTCAAATGTTAACTAGCATGATAATATTTCTGACCATACAAAAATAGCCAAATGTTAATAGATAGCTAGTCACAATACAAACAGCCTTGATAAAAACTAGATATTAGGTGTCATACTTGCTGTCACATTTGTTTAGATTTATGAATTTAGATGAACTCCTTGAAGCTATCTAAAACTAAAAGTCACCTCATGAGATTACAAGTATATCTAGCCATAAACTAGCACTAACTAGTTACATGTAATGCCTGACAGGTTGGGGTAAGTTAGCGAGCTAAATTTCTACATTTAGAAGCTAAACGTCAAGACAGACAATTAACTTACATTTGTATTGTACATTTGTATGTAATATATTCCTAAGCATACTCTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203043 True 1603 lncRNA 0.32 1 25264368 25265970

Neighbor

gene id symbol gene type direction distance location
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding downstream 12065 25240086 ~ 25252303 (-)
txndc16 txndc16 coding downstream 57895 25182416 ~ 25206473 (-)
nid2a nid2,wu:fb77a09 coding downstream 157609 25056364 ~ 25106759 (-)
si:ch211-266o15.1 LOC108269816 coding downstream 217582 25009783 ~ 25046786 (-)
cep295 LOC108269817 coding downstream 272540 24974039 ~ 24991828 (-)
gch1 gch1,LOC107583460,LOC107564951,LOC107693131,LOC107723641,LOC107751761,LOC107680005 coding upstream 54540 25320510 ~ 25335259 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 70576 25336546 ~ 25361861 (-)
socs4 socs4,LOC108270091,LOC107564995 coding upstream 103535 25369505 ~ 25371805 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding upstream 123961 25389931 ~ 25396747 (-)
ros1 NA coding upstream 132120 25398090 ~ 25418463 (-)
G171542 NA non-coding downstream 1841 25261608 ~ 25262527 (-)
G171381 NA non-coding downstream 254979 25008099 ~ 25009389 (-)
G171257 NA non-coding downstream 349218 24783017 ~ 24915150 (-)
G171260 NA non-coding downstream 442147 24813178 ~ 24822221 (-)
G171258 NA non-coding downstream 463305 24766910 ~ 24801063 (-)
G171543 NA non-coding upstream 1932 25267902 ~ 25271762 (-)
G171572 NA non-coding upstream 20072 25286042 ~ 25286781 (-)
G171570 NA non-coding upstream 21182 25287152 ~ 25289502 (-)
G171573 samd4a non-coding upstream 25456 25291426 ~ 25291938 (-)
G171594 NA non-coding upstream 123613 25389583 ~ 25389871 (-)
G171569 NA other downstream 5006 25258839 ~ 25259362 (-)
G171256 NA other downstream 338144 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 720289 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2084857 23148743 ~ 23179511 (-)
G170435 NA other downstream 2400601 22855494 ~ 22863767 (-)
G171734 NA other upstream 312969 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2299288 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2405653 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2633512 27899482 ~ 27910890 (-)
G172919 NA other upstream 2646267 27912237 ~ 27912544 (-)

Expression


Co-expression Network