G171570


Basic Information

Item Value
gene id G171570
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25287152 ~ 25289502 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203076
GATTTATgatttaacatatttataagaaaacaaatgaaaatggcatggaCAAAAATATTGGTACCCttaacttaatattttgttgtaCAGCCTTTGGAGGAAAAGACTgcaattaaatgttttctgtagttCTGAATAAGATTTCTCTGCTGGTATTTTGACCcactctttttttaatacacttctCCAGCTTTCTCAAGTTTGAGGGGTGCCATCAGCCAACTGCAAGTTTCAGCTTTTTTCCACAAATGTTCAATAGGATTCAGATCAGGACTCATGGAAGGCTACATCAGAACAGTCCAATGTTTTCTCCTTATCCCTTTTTTGGCTGCTTTTTGATGCGTGCTTCGGCTCGTTATCCTGCTGGAGACCCATGACCTGTGACTGAGGCAcagctttctgacactgggctGTATGTTCGGCTCCAAAATGCCTTGCTAGTCTTCTGACTccattgtgccctgcacagattcaaggcacCCAGTACATGAggcagcaaagcatccccaaaACATCACTGAgcctcctccatgtttcacagtagtCACAGTGTTCATTTCTTGAAAGCTTCTCCTATAAACATACAGTTGATGGGATTTTCCAAAAAGCTCTAATTTTGTTTCATGCCCAAAGCGCATTCTGCCAGAATGACTGTGGTTTGTCAACAAGTCCAGTCTGGCCTTTTTTGTGAGTTGCTTTTAGAAAAGGTGTCCTCCTGGGTCTTCTGCCATGAAGCCCACTTTCATTCAGACACCGGCGGATGGTTTGACTGGAAATTGTTGTACCTTGAGCTTGAAGGATCTGACAGACCCTTTGGAtctgttttgatattttctttgttctttttttaaccattcgAACAATCTGTCTGTTCAACTGTGGGCTAATTTTGCTCTTGCGACTTCGTCCAGAGATGTTGGCTACAGTCACATGGGCCTTAAACTTCTTTAGAATATTGCCAACTGTggtcacaggaacatcaagctCTTTAGAAATGATCTTGTAACCTTTACATTGAGCATGCTTGGCTATGAACCTCAGACCACTCTCTGCTTTTCCTTCTGTTTGCCATGTTCAGTGGAATACCCACAGTGGAATAAGACAGCTAGATGAGTAACTACATCCATTTAAACTGGCTGCATGAGTGTTTATAAGACTGAAAAAGATTGTACAATGAATTAAATCTGAACAGTCTTCTCAAACTATCACCACAATGCAATTTTTCTTACAACTTTCAAAGGGTACCAATAATTTTGTCCAAGCTATTTTAGAATGTCTTAgtaaaaaaggtaaataatgcagatattttcaaaatgttttggtttgttCCAGTGCAACCTAAAGACACACATGTGgagataatatttttttaaacatttgaacacTTTCTGGGGCaaattgtgttttaatttaataaaatccaGGGGATtatattatcaatatttttGGCAACGTCTGTATGTCCACAACCTTTGTGTATCCTGTAttatatcacagcgctgttgaattcttgattctgactaGTCAGGTGGTGTTTTGAGTAATATCTATAACAGCtctgacaaatcacaggttaatatcAATGCACTcattataatatgttattgtttctatagtaacagctcattcacagggaattgtatggTGCATGCtcaatctaagactaataacaaAGGGATTGCAGAAAGTCTTGTTCTTTAACAAGCAAAAAATGCTAAATCGTTGATAAGGTGaagatttttattctgtttatgtaacatttatgtaaggagtctccagtgtcagtgctttgtaacagtcagtatttTTTTAGCCATGGGAGAATCCTCTTGACAGAGGGTTTGTGCTTtctgatttctcagtaacatgacaacctTGTTCATGGATGATTCACAACATGTAACTGTAACTCTAAATAGATAAGAAGCatgacatttattaattaataaaaaatgtactcattggtataaaagaataaaagactttgggatatgctgttatCTGAAAAGAACAACTTCTAGGTGGTAAGGCCCCAGTGCAATCACACCAtcttgtcactgattatttccccataacagcacacccccacagtgtttaattccttacttcTCAACCAtttaatttctctctcacttttggtcatttcaacttttttttgtatttcctcCTCTGTCCAAATACTGCCCATTAACCTGTGACCTTCAATCTCAAACTTTACAATTTTATGCATTCAGATAtaagaattatgggattgcctATGATGAAAATTTATCAGAAATAGAAGTAACATTTGAATCAAGCACTGCTGACATCAGAGGCTTGAGAAGGTTTCATTTCTTTACCTCGACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203076 True 2351 lncRNA 0.37 1 25287152 25289502

Neighbor

gene id symbol gene type direction distance location
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding downstream 34849 25240086 ~ 25252303 (-)
txndc16 txndc16 coding downstream 80679 25182416 ~ 25206473 (-)
nid2a nid2,wu:fb77a09 coding downstream 180393 25056364 ~ 25106759 (-)
si:ch211-266o15.1 LOC108269816 coding downstream 240366 25009783 ~ 25046786 (-)
cep295 LOC108269817 coding downstream 295324 24974039 ~ 24991828 (-)
gch1 gch1,LOC107583460,LOC107564951,LOC107693131,LOC107723641,LOC107751761,LOC107680005 coding upstream 31008 25320510 ~ 25335259 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 47044 25336546 ~ 25361861 (-)
socs4 socs4,LOC108270091,LOC107564995 coding upstream 80003 25369505 ~ 25371805 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding upstream 100429 25389931 ~ 25396747 (-)
ros1 NA coding upstream 108588 25398090 ~ 25418463 (-)
G171572 NA non-coding downstream 371 25286042 ~ 25286781 (-)
G171543 NA non-coding downstream 15390 25267902 ~ 25271762 (-)
G171545 NA non-coding downstream 21182 25264368 ~ 25265970 (-)
G171542 NA non-coding downstream 24625 25261608 ~ 25262527 (-)
G171381 NA non-coding downstream 277763 25008099 ~ 25009389 (-)
G171573 samd4a non-coding upstream 1924 25291426 ~ 25291938 (-)
G171594 NA non-coding upstream 100081 25389583 ~ 25389871 (-)
G171710 NA non-coding upstream 180002 25469504 ~ 25470074 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding upstream 214886 25504388 ~ 25509620 (-)
G171755 NA non-coding upstream 484002 25773504 ~ 25778966 (-)
G171569 NA other downstream 27790 25258839 ~ 25259362 (-)
G171256 NA other downstream 360928 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 743073 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2107641 23148743 ~ 23179511 (-)
G170435 NA other downstream 2423385 22855494 ~ 22863767 (-)
G171734 NA other upstream 289437 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2275756 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2382121 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2609980 27899482 ~ 27910890 (-)
G172919 NA other upstream 2622735 27912237 ~ 27912544 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G129434 NA non-coding NC_048566.1 CM023220.2 28045295 ~ 28045512 (-)
bowfin (Amia calva) G119048 NA non-coding CM030135.1 CM030135.1 22627545 ~ 22630125 (-)
mexican tetra (Astyanax mexicanus) G110324 NA non-coding NC_035909.1 CM008312.1 10069778 ~ 10141472 (-)