G171573 (samd4a)


Basic Information

Item Value
gene id G171573
gene name samd4a
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25291426 ~ 25291938 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203079
TGCTTCCActtcctgtgcccactgtattGATGGTAGAAGGGACTGATGATGATGGGTATAGAAGAAGATGTCCGTTCTCACAGccctgctgttgttgctgtgtgtgCCAGGTGGCAATGCCCGAGTCTCGGGATCCCTGCCAGCCATTGAGACGATCATCAGAGCCGTAACGCTGATGCTGGGCATAAAGATGATGAGAAGAAGGCACTCGCTCCAATgaatctcctcctcctccagcagTGCGAGTGGCTGCCCGTTCCTCCAGATGGTTGAGCCAGAGAGCGAGATCGGCCCGGTCCTCCAGAGACGTGGCCGGGTGGATGAGAGCGTACGAGAGCAGCTGCCTGCTCTCTTCAAGGTGCCGCCCAAACTCGATTGTGTGGGTGAGGATTTTGGGAAGTAGCCGCATGTACTCGCTTTTGGCTTCGCCGTTGCCCGGTTTGAGGAGGGGCAGATGGGTCAGGACCAGAGAGATGAGACGCTCTTTTGGCTCGGCCTGCCACTGGCCAATTA

Function

symbol description
samd4a Predicted to enable mRNA binding activity and translation repressor activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within negative regulation of translation and regulation of mRNA stability. Predicted to be active in P-body. Orthologous to human SAMD4A (sterile alpha motif domain containing 4A).

NR:

description
COMM domain-containing protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203079 True 513 lncRNA 0.57 1 25291426 25291938

Neighbor

gene id symbol gene type direction distance location
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding downstream 39123 25240086 ~ 25252303 (-)
txndc16 txndc16 coding downstream 84953 25182416 ~ 25206473 (-)
nid2a nid2,wu:fb77a09 coding downstream 184667 25056364 ~ 25106759 (-)
si:ch211-266o15.1 LOC108269816 coding downstream 244640 25009783 ~ 25046786 (-)
cep295 LOC108269817 coding downstream 299598 24974039 ~ 24991828 (-)
gch1 gch1,LOC107583460,LOC107564951,LOC107693131,LOC107723641,LOC107751761,LOC107680005 coding upstream 28572 25320510 ~ 25335259 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 44608 25336546 ~ 25361861 (-)
socs4 socs4,LOC108270091,LOC107564995 coding upstream 77567 25369505 ~ 25371805 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding upstream 97993 25389931 ~ 25396747 (-)
ros1 NA coding upstream 106152 25398090 ~ 25418463 (-)
G171570 NA non-coding downstream 1924 25287152 ~ 25289502 (-)
G171572 NA non-coding downstream 4645 25286042 ~ 25286781 (-)
G171543 NA non-coding downstream 19664 25267902 ~ 25271762 (-)
G171545 NA non-coding downstream 25456 25264368 ~ 25265970 (-)
G171542 NA non-coding downstream 28899 25261608 ~ 25262527 (-)
G171594 NA non-coding upstream 97645 25389583 ~ 25389871 (-)
G171710 NA non-coding upstream 177566 25469504 ~ 25470074 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding upstream 212450 25504388 ~ 25509620 (-)
G171755 NA non-coding upstream 481566 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 685858 25977796 ~ 25978027 (-)
G171569 NA other downstream 32064 25258839 ~ 25259362 (-)
G171256 NA other downstream 365202 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 747347 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2111915 23148743 ~ 23179511 (-)
G170435 NA other downstream 2427659 22855494 ~ 22863767 (-)
G171734 NA other upstream 287001 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2273320 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2379685 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2607544 27899482 ~ 27910890 (-)
G172919 NA other upstream 2620299 27912237 ~ 27912544 (-)

Expression


Co-expression Network