LOC113534148


Basic Information

Item Value
gene id LOC113534148
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25426891 ~ 25430929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203104
ATGTAAGTGTTCAGTGTATATTCAGTTTCACAAAGGCAGAAATGGTGTCTGTCACCCTCTTCCTGATCACGCTGTGACTTTTCCCCACCCCTTCTGTTCCTCCTATAAACATACTACCATGAACACAGATGCAGAACTGTTCTGTTCTGCTCTCTAGCTCAAGCTTGGAAGTGCTTCTATTTTAATCACTTCTATTCACCTTTAGCACCTTTCTCCCCTTCTAACGGAGTAAGCGCTAGCAGCTGACAGTACTGCGGCTCAGTCCCCTGGGCGGTCACTTCACCTCCTGTCTCTCGTCCCTGATCCTCCGGCGCGATGGAGAGAGTTCAACACATCACCCGCTCGGCCATACGCAGGGCCTCCGTCATCGAGGTGAACCCGCAGACCAAACGCAACCTGCAAGAGCTCTTCGTCAACTTCTCGCTCATCCTCATCTGCCTGCTCCTCATCTACATCATCGTCCTGCTGTTGTGAGGATGGAAGACATGCGTGGCCGAAGGAACCCGAGGCCTGGATGGAGCTTGGGACAAGAACAGGACTTTCCCCACATTATTGCTGGCTTTTATTACATGGTGTGATCATATTTAGAAATTAGGATGCTGGATTTTTCTagatattttcatttctctccatttcttaCCATATGCACTACAGTCAACGATACTTACTGTACATTACCCTACACCTGTGACTAAATCAGATGTctatatgattatatttcataaatacacattattatCCAAGAAAAGCAAACTTTTCATATGAAGGTATTTAGCATACATACTGCCTCAGAAGTAATAGGGccaagtaaataaaattaagggtgcagtttgtaatttttaaaagcttttctaAATTTATATCAATTATATATTATCGAAGACTCCtgcaatattcaatattcacaatattgatatgcaATGGATCTCACTACATTATTTGTTTCtggcttctgtttacatttttctggcccagaaattaccATCAACCTCACCAAAGAGCTGCTTAAAACCCAACCCATGAGGCATGTGTGCAGTcagagaggatgaggagaaaGACAAGGCCGGTTAatgttttaatcatgtttttgtaATCTCTTCTTAGCCAGCAGAGGATGCTAAACATcccaaaaaattatttttacacacaaaatcaaACATTCTggtttcccaaaaaaaaaaaaaa
>XM_026926767.2
ACCATGAACACAGATGCAGAACTGTTCTGTTCTGCTCTCTAGCTCAAGCTTGGAAGTGCTTCTATTTTAATCACTTCTATTCACCTTTAGCACCTTTCTCCCCTTCTAACGACAGGAGTAAGCGCTAGCAGCTGACAGTACTGCGGCTCAGTCCCCTGGGCGGTCACTTCACCTCCTGTCTCTCGTCCCTGATCCTCCGGCGCGATGGAGAGAGTTCAACACATCACCCGCTCGGCCATACGCAGGGCCTCCGTCATCGAGGTGAACCCGCAGACCAAACGCAACCTGCAAGAGCTCTTCGTCAACTTCTCGCTCATCCTCATCTGCCTGCTCCTCATCTACATCATCGTCCTGCTGTTGTGAGGATGGAAGACATGCGTGGCCGAAGGAACCCGAGGCCTGGATGGAGCTTGGGACAAGAACAGGACTTTCCCCACATTATTGCTGGCTTTTATTACATGGTGTGATCATATTTAGAAATTAGGATGCTGGATTTTTCTagatattttcatttctctccatttcttaCCATATGCACTACAGTCAACGATACTTACTGTACATTACCCTACACCTGTGACTAAATCAGATGTctatatgattatatttcataaatacacattattatCCAAGAAAAGCAAACTTTTCATATGAAGGTATTTAGCATACATACTGCCTCAGAAGTAATAGGGccaagtaaataaaattaagggtgcagtttgtaatttttaaaagcttttctaAATTTATATCAATTATATATTATCGAAGACTCCtgcaatattcaatattcacaatattgatatgcaATGGATCTCACTACATTATTTGTTTCtggcttctgtttacatttttctggcccagaaattaccATCAACCTCACCAAAGAGCTGCTTAAAACCCAACCCATGAGGCATGTGTGCAGTcagagaggatgaggagaaaGACAAGGCCGGTTAatgttttaatcatgtttttgtaATCTCTTCTTAGCCAGCAGAGGATGCTAAACATcccaaaaaattatttttacacacaaaatcaaACATTCTggtttcccaaaaaaaaaaaaaaaaaaaag
>XM_026926768.2
CATGAACACAGATGCAGAACTGTTCTGTTCTGCTCTCTAGCTCAAGCTTGGAAGTGCTTCTATTTTAATCACTTCTATTCACCTTTAGCACCTTTCTCCCCTTCTAACGGAGTAAGCGCTAGCAGCTGACAGTACTGCGGCTCAGTCCCCTGGGCGGTCACTTCACCTCCTGTCTCTCGTCCCTGATCCTCCGGCGCGATGGAGAGAGTTCAACACATCACCCGCTCGGCCATACGCAGGGCCTCCGTCATCGAGGTGAACCCGCAGACCAAACGCAACCTGCAAGAGCTCTTCGTCAACTTCTCGCTCATCCTCATCTGCCTGCTCCTCATCTACATCATCGTCCTGCTGTTGTGAGGATGGAAGACATGCGTGGCCGAAGGAACCCGAGGCCTGGATGGAGCTTGGGACAAGAACAGGACTTTCCCCACATTATTGCTGGCTTTTATTACATGGTGTGATCATATTTAGAAATTAGGATGCTGGATTTTTCTagatattttcatttctctccatttcttaCCATATGCACTACAGTCAACGATACTTACTGTACATTACCCTACACCTGTGACTAAATCAGATGTctatatgattatatttcataaatacacattattatCCAAGAAAAGCAAACTTTTCATATGAAGGTATTTAGCATACATACTGCCTCAGAAGTAATAGGGccaagtaaataaaattaagggtgcagtttgtaatttttaaaagcttttctaAATTTATATCAATTATATATTATCGAAGACTCCtgcaatattcaatattcacaatattgatatgcaATGGATCTCACTACATTATTTGTTTCtggcttctgtttacatttttctggcccagaaattaccATCAACCTCACCAAAGAGCTGCTTAAAACCCAACCCATGAGGCATGTGTGCAGTcagagaggatgaggagaaaGACAAGGCCGGTTAatgttttaatcatgtttttgtaATCTCTTCTTAGCCAGCAGAGGATGCTAAACATcccaaaaaattatttttacacacaaaatcaaACATTCTggtttcccaaaaaaaaaaaaaaaaaaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203104 True 1185 lncRNA 0.42 2 25426891 25430922
XM_026926767.2 False 1081 mRNA 0.41 2 25427006 25430929
XM_026926768.2 False 1075 mRNA 0.41 2 25427008 25430929

Neighbor

gene id symbol gene type direction distance location
gnpnat1 gnpnat1,LOC107693128 coding upstream 38231 25381712 ~ 25388660 (+)
gpr137c gpr137c coding upstream 188300 25206836 ~ 25238591 (+)
LOC117598271 LOC108191637 coding upstream 253577 25171545 ~ 25173314 (+)
ptger2a LOC108269911 coding upstream 294001 25114777 ~ 25132890 (+)
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding upstream 371641 25047670 ~ 25055250 (+)
si:ch211-266g18.6 LOC107680798 coding downstream 38529 25469458 ~ 25489162 (+)
cx40.8 LOC108269439,LOC108443405,LOC103044257 coding downstream 59346 25490275 ~ 25494255 (+)
fabp7a fabp7a,LOC108443406,LOC108269522,LOC107693085,LOC107723744,LOC107583466,LOC107751758 coding downstream 73553 25504482 ~ 25506510 (+)
marcksb LOC108270344 coding downstream 147964 25578893 ~ 25582638 (+)
rragd LOC108270433,LOC108435430,LOC107755772,LOC107693082,LOC107583676,LOC107751745 coding downstream 253920 25684849 ~ 25704808 (+)
G171523 NA non-coding upstream 37386 25389366 ~ 25389505 (+)
G171522 NA non-coding upstream 37725 25388772 ~ 25389166 (+)
G171485 NA non-coding upstream 147214 25271849 ~ 25279677 (+)
G171440 NA non-coding upstream 187827 25189165 ~ 25239064 (+)
G171430 LOC108191637 non-coding upstream 250658 25175826 ~ 25176233 (+)
G171619 NA non-coding downstream 87187 25518116 ~ 25522689 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding downstream 156560 25587489 ~ 25592749 (+)
G171684 NA non-coding downstream 251465 25682394 ~ 25778732 (+)
LOC117598331 NA non-coding downstream 1195011 26625940 ~ 26686726 (+)
G172052 NA non-coding downstream 1358594 26789523 ~ 26789807 (+)
samd4a samd4a other upstream 108614 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 248994 25176374 ~ 25177897 (+)
G171329 NA other upstream 419125 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 426272 24994493 ~ 25000619 (+)
kdm1a kdm1a other upstream 944037 24463466 ~ 24482854 (+)
nrxn3a nrxn3,LOC107583487 other downstream 1725414 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 2294278 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 2597071 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 3430533 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 3623304 29054233 ~ 29138878 (+)

Expression


Co-expression Network