G171710


Basic Information

Item Value
gene id G171710
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25469504 ~ 25470074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203256
GTGGCTTTGATCGCGGCGTGGTTGCTGCTGCCAGATATGCTGGGGTGAGTGTTTTgaaaattgctgatctcctgggatttccacacacaatagtctatacagaatggtgcaaaaaaaacatccagtgagcatcagttctgGGGTAGAAATACCAGAGGAGAAGgatcagactggttcaagctgacaggaaggctgcagtaattcgaatagccactctttaaaaccgtgctgagcagaaaagcatgtcagaatgcacaataccttgaggcagatgggctacaacagcagaagaccacactgggttccactcctgtcagccaagaacaggaatctgagggtGTAGTGTGCCTAGGCTGTGGGCATGTCTTAAACATTACACTGTGTTAATTTTTTCAGTCAGCGATACACACTTCTGACATCGAGGAAGCATCAGACATTTTAGTTCATATTGCTCAAAGTTAATGTCAGAATGGCAGCAGTGGTGGATGCAGACAATAACtgttaaacagacaaacaattCCAAACACAAATCCAAAATCAAGGTAGTTAAACAGGTACAAGTCAACAGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203256 True 571 lncRNA 0.44 1 25469504 25470074

Neighbor

gene id symbol gene type direction distance location
zgc:85722 LOC108270090,LOC108443409 coding downstream 935 25431323 ~ 25468569 (-)
ros1 NA coding downstream 51041 25398090 ~ 25418463 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding downstream 72757 25389931 ~ 25396747 (-)
socs4 socs4,LOC108270091,LOC107564995 coding downstream 97699 25369505 ~ 25371805 (-)
wdhd1 wdhd1,LOC107583614 coding downstream 107643 25336546 ~ 25361861 (-)
LOC117598272 LOC108270379 coding upstream 51290 25521364 ~ 25533476 (-)
LOC117598273 NA coding upstream 63402 25533476 ~ 25534660 (-)
LOC113534087 LOC108270379 coding upstream 64658 25534732 ~ 25555563 (-)
fyna fyna,LOC108270342,LOC108443411,LOC107751750,LOC107680776,LOC107583469,LOC107755790 coding upstream 87335 25557409 ~ 25574121 (-)
col10a1a col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107564946,LOC107680775,LOC101475390,LOC105908263 coding upstream 117414 25587488 ~ 25592743 (-)
G171594 NA non-coding downstream 79633 25389583 ~ 25389871 (-)
G171573 samd4a non-coding downstream 177566 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 180002 25287152 ~ 25289502 (-)
G171572 NA non-coding downstream 182723 25286042 ~ 25286781 (-)
G171543 NA non-coding downstream 197742 25267902 ~ 25271762 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding upstream 34314 25504388 ~ 25509620 (-)
G171755 NA non-coding upstream 303430 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 507722 25977796 ~ 25978027 (-)
G171874 NA non-coding upstream 588171 26058245 ~ 26058509 (-)
G172016 NA non-coding upstream 1125207 26595281 ~ 26595483 (-)
G171569 NA other downstream 210142 25258839 ~ 25259362 (-)
G171256 NA other downstream 543280 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 925425 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2289993 23148743 ~ 23179511 (-)
G170435 NA other downstream 2605737 22855494 ~ 22863767 (-)
G171734 NA other upstream 108865 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2095184 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2201549 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2429408 27899482 ~ 27910890 (-)
G172919 NA other upstream 2442163 27912237 ~ 27912544 (-)

Expression


Co-expression Network