G171726 (fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466)


Basic Information

Item Value
gene id G171726
gene name fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25504388 ~ 25509620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203274
CAGGACTCCATCACTCACACGTTTCATATAAAAAgcgataaaaaaaaacatgtcccATGACTTAAAATGGGACAGTCTAGGTTTATACTGAGAAAAAATAATGCTGCTCGGACATTGTCAAGTTGCCAGGAGTAGACTGAAGCATCCTTGAGTTGTATCATTACGCCTTTTCATATGTGCGAACGGCCTGGACACCCTCGAAGGTCAAAGTCTGTGAAGGACAAACGAAAGGCGAGTGATTATATTATTAGAGGTGTAATAAATCCACCAGTCATGTCACTTATTTACCTTTATAACACTCACAACAAATATAACtatgatatgaaatattttcaattcaagttatatactatactatactatgctatatttattattatattatgctataatactataatatactatatatcattcagaatgaacagataatgtttccatgggcatagtggtagggttcatatttaattttaaaaacaaaaaacaaacaaacaaaaaaaaacgttcctattcaggccacgcccactttgggaataaatctgaatacagatacagagacagaaaatgtggggcactaaacagatacagatacagttaGGCCCCTATTCCCATACTGTACATACTCTACAAtctgtatatactatatacactatacagtatactatCACTTTCTATCATTTTAGCAGCATTATGTTGCTTTTTGTTACTGAGTATTTTTGTATCTTTATACTCTGCCTTAATACTGCAGACACTCACCACATTAAACGACCAAGTTACCATCCCAACATCCAAAATATAACTCTGCAACTCTGCAATTTATCTTAATATTGTGGCCCTCGCCACTCGTGTGGATAATTATGTTCATGTTTATTGTAACGGTGCAGAACAGCATGCAAGTcagaatttcattcactctacttgacaaaaaaacatgaacttTGAGTGTaaaagtatccattttaatTGATATCAATGGAaagaagtgttttttcttttaccatGATCATTTTGCCGTCCTTGATTTCTCGGACAAACTTGGTTTCTTTTCCATCCCACTTCTGCACATGCACAAGTTTGTCTTCGTCCAAGGTCACTGCGGACTGTTAGGACAGATAAATGTATATAGTGTAAATTATTGGTTACTTTCTTGACAGTAAAGTAACACTTTCTcaaatacaatttattattatatattgcaCATAAGATAAcatttgtgaatttattttgtgtttcctATTGGATTCTTGCACTGACAGTACAAGTATGTAAAAGTACAAATATGATCATTTTTGTTCAACATTTATCACAATAACATGATCTTAAAGATTAAAATGGATGGATTAATTGAACATCTGAGTCTCTCCATGCACAAACCTTTACATTCCTGTCATCTGCAGTGGTTTCGTCAAACTCCTCTCCCAGTTTGAAGGAGATCTCAGTGTTCTTGAAAGTGCTCAGCGTTTTAATGATGACCTTGTCTCCTTCTTGGCTGATGACGATTGTGGGTTTGGTGACATTTCCCACTTGCCTTGTGGCAAAGCCAACACCTggcaaaattaataaattaacacagCACTGATGATTCACAGCAATTTAACCTCAACCTATGGACACACAGGCTCAGATTTCAACTAGATTTCAAACTAGTTAAtgtgtatattattaataagtGTAACAAATGTAGTTCATATTATTAATCCATCCTGGTCCTGTTTATCCATGGTTCAAAACATGATgagttacagaaaataaaaataaaataaaacatttcttttattttggttgggtttattatcattaaaaataagtaGAACCATTTTAACTTACCCAGTGCTTTCATGTATTCATCAAAGTTCTGGCTGTCTATGAGTTTCCAGGTCGCACAGAAAGCATCAACCATGTTGAGAGTTCACGTGTGAGTCCACCAGCACACAAAAAAATGGCTCAGAGACAGGAGACTGACTACAAACTGTAAAAGTCCAGTGTAATTAATACTACACAGGAGGCAGGGCCACAGCTCTCTGCTCCTGATTGGATGGTTTTAGGAATTCCATGAGCAGTGATTGGC

Function

symbol description
fabp7 Predicted to enable lipid binding activity. Predicted to be involved in negative regulation of cell population proliferation and nervous system development. Predicted to act upstream of or within cell proliferation in forebrain; neurogenesis; and prepulse inhibition. Predicted to be located in several cellular components, including cell projection; cell-cell junction; and neuronal cell body. Biomarker of glioblastoma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203274 True 2068 lncRNA 0.35 2 25504388 25509620

Neighbor

gene id symbol gene type direction distance location
zgc:85722 LOC108270090,LOC108443409 coding downstream 35819 25431323 ~ 25468569 (-)
ros1 NA coding downstream 85925 25398090 ~ 25418463 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding downstream 107641 25389931 ~ 25396747 (-)
socs4 socs4,LOC108270091,LOC107564995 coding downstream 132583 25369505 ~ 25371805 (-)
wdhd1 wdhd1,LOC107583614 coding downstream 142527 25336546 ~ 25361861 (-)
LOC117598272 LOC108270379 coding upstream 11744 25521364 ~ 25533476 (-)
LOC117598273 NA coding upstream 23856 25533476 ~ 25534660 (-)
LOC113534087 LOC108270379 coding upstream 25112 25534732 ~ 25555563 (-)
fyna fyna,LOC108270342,LOC108443411,LOC107751750,LOC107680776,LOC107583469,LOC107755790 coding upstream 47789 25557409 ~ 25574121 (-)
col10a1a col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107564946,LOC107680775,LOC101475390,LOC105908263 coding upstream 77868 25587488 ~ 25592743 (-)
G171710 NA non-coding downstream 34314 25469504 ~ 25470074 (-)
G171594 NA non-coding downstream 114517 25389583 ~ 25389871 (-)
G171573 samd4a non-coding downstream 212450 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 214886 25287152 ~ 25289502 (-)
G171572 NA non-coding downstream 217607 25286042 ~ 25286781 (-)
G171755 NA non-coding upstream 263884 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 468176 25977796 ~ 25978027 (-)
G171874 NA non-coding upstream 548625 26058245 ~ 26058509 (-)
G172016 NA non-coding upstream 1085661 26595281 ~ 26595483 (-)
G172196 NA non-coding upstream 1262512 26772132 ~ 26773050 (-)
G171569 NA other downstream 245026 25258839 ~ 25259362 (-)
G171256 NA other downstream 578164 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 960309 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2324877 23148743 ~ 23179511 (-)
G170435 NA other downstream 2640621 22855494 ~ 22863767 (-)
G171734 NA other upstream 69319 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2055638 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2162003 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2389862 27899482 ~ 27910890 (-)
G172919 NA other upstream 2402617 27912237 ~ 27912544 (-)

Expression


Co-expression Network