G171874


Basic Information

Item Value
gene id G171874
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26058245 ~ 26058509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203440
ctcgggtccggcagggattgtaggtggggggagtgaatgaccagcgctctctcccaccctcaatactacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgctgcagcaaaaaaggctgcccactgctccgggtgtgtgttcacggtgtgtgtgtgttcactactgtgtgtgtgcacttggatgggttaaatgcagagcacaaattcctagtatgggtcaccatacttggccacaagtcactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203440 True 265 lncRNA 0.56 1 26058245 26058509

Neighbor

gene id symbol gene type direction distance location
cx52.7 LOC108269563 coding downstream 377504 25679314 ~ 25680741 (-)
manea LOC108270006 coding downstream 388270 25664338 ~ 25669975 (-)
fut9a fut9,fut9a,LOC108443415,LOC107583473,LOC107751748,LOC107564944,LOC107755789 coding downstream 397590 25651808 ~ 25660655 (-)
fhl5 fhl5,LOC108270008,LOC107755788,LOC107583474,LOC107693122,LOC108443407,LOC107680759,LOC107751805 coding downstream 418024 25634727 ~ 25640221 (-)
si:ch211-266g18.9 LOC108270005 coding downstream 424362 25620016 ~ 25633883 (-)
LOC113534079 LOC108269777 coding upstream 254300 26312809 ~ 26321625 (-)
si:dkey-288a3.2 LOC108270389 coding upstream 304557 26363066 ~ 26403989 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding upstream 682865 26741374 ~ 26794919 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding upstream 760391 26818900 ~ 26845135 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding upstream 788337 26846846 ~ 26898308 (-)
G171864 NA non-coding downstream 80218 25977796 ~ 25978027 (-)
G171755 NA non-coding downstream 279279 25773504 ~ 25778966 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding downstream 548625 25504388 ~ 25509620 (-)
G171710 NA non-coding downstream 588171 25469504 ~ 25470074 (-)
G171594 NA non-coding downstream 668374 25389583 ~ 25389871 (-)
G172016 NA non-coding upstream 536772 26595281 ~ 26595483 (-)
G172196 NA non-coding upstream 713623 26772132 ~ 26773050 (-)
G172207 NA non-coding upstream 770809 26829318 ~ 26829729 (-)
G172211 NA non-coding upstream 811838 26870347 ~ 26870619 (-)
G172212 NA non-coding upstream 836259 26894768 ~ 26959616 (-)
G171734 NA other downstream 475718 25578939 ~ 25582527 (-)
G171569 NA other downstream 798883 25258839 ~ 25259362 (-)
G171256 NA other downstream 1132021 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 1514166 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2878734 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 1506749 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 1613114 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 1840973 27899482 ~ 27910890 (-)
G172919 NA other upstream 1853728 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 2739640 28798149 ~ 28860011 (-)

Expression


Co-expression Network