G172052


Basic Information

Item Value
gene id G172052
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26789523 ~ 26789807 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203645
GAACTCTTCCTAGCTTCCAAACTTATGAGCATGTACAGTAGTTTACATGTTTATaagacattttctttaaaaatctttcATCATTTATGCATGGCGTACACTTATTTTCCATCTTAAGAGTGTAACTgtgcagaaaaacaagaagaaattgagaaggaaagtggtgaaaattaaaatgattattagtagtagtatcatTATTGTCACATTTGTTTAACAAGGGGCTGTTCAACGACATCGACAGTTTGACGTCTTGATCTGTTTTCAAATCTTTTACTAGTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203645 True 285 lncRNA 0.32 1 26789523 26789807

Neighbor

gene id symbol gene type direction distance location
vrk1 vrk1 coding upstream 370316 26405390 ~ 26419207 (+)
ak7b LOC108269780 coding upstream 429432 26349862 ~ 26360091 (+)
LOC113533735 amhr2 coding upstream 441183 26334822 ~ 26348340 (+)
galcb LOC108269778,LOC108444013,LOC107372531 coding upstream 455467 26323399 ~ 26334056 (+)
LOC113534080 NA coding upstream 477016 26307077 ~ 26312507 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding downstream 113832 26903639 ~ 26914229 (+)
trnat-ugu_12 NA coding downstream 125551 26915358 ~ 26915430 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding downstream 214302 27004109 ~ 27006749 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding downstream 218127 27007934 ~ 27125905 (+)
tdp1 tdp1,LOC102776284 coding downstream 937071 27726878 ~ 27760866 (+)
LOC117598331 NA non-coding upstream 102797 26625940 ~ 26686726 (+)
G171684 NA non-coding upstream 1010791 25682394 ~ 25778732 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding upstream 1196774 25587489 ~ 25592749 (+)
G171619 NA non-coding upstream 1266834 25518116 ~ 25522689 (+)
G171523 NA non-coding upstream 1400018 25389366 ~ 25389505 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding downstream 13249 26803056 ~ 26839478 (+)
G172099 NA non-coding downstream 77310 26867117 ~ 26960238 (+)
G172118 NA non-coding downstream 177525 26967332 ~ 26967536 (+)
G172114 NA non-coding downstream 177803 26967610 ~ 26968416 (+)
G172097 sptlc2,sptlc2b,LOC107747949,LOC107572124,LOC101069659,LOC107662183,LOC107728348,LOC107681046 non-coding downstream 183889 26973696 ~ 26973942 (+)
LOC113534148 NA other upstream 1358594 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 1471246 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1611626 25176374 ~ 25177897 (+)
G171329 NA other upstream 1781757 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1788904 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 366536 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 935400 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1238193 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 2071655 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2264426 29054233 ~ 29138878 (+)

Expression


Co-expression Network