G172118


Basic Information

Item Value
gene id G172118
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26967332 ~ 26967536 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203720
atttaataaacattttcgGCATTGTTTCTGTCACTTTTggagatttatatttaaatcaaaacagtcaaatctcaaaaatacagACTATGCAAATCATTTTAGAAAATCAttttacaaatatgtaaaaaaaaataattgcattttagaattttaaagattcaaacagtaaaaaaatttaTCTAACTATCAAATGCTTGTTATAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203720 True 205 lncRNA 0.20 1 26967332 26967536

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_12 NA coding upstream 51902 26915358 ~ 26915430 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding upstream 53103 26903639 ~ 26914229 (+)
vrk1 vrk1 coding upstream 548125 26405390 ~ 26419207 (+)
ak7b LOC108269780 coding upstream 607241 26349862 ~ 26360091 (+)
LOC113533735 amhr2 coding upstream 618992 26334822 ~ 26348340 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding downstream 36573 27004109 ~ 27006749 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding downstream 40398 27007934 ~ 27125905 (+)
tdp1 tdp1,LOC102776284 coding downstream 759342 27726878 ~ 27760866 (+)
kcnk13a kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770 coding downstream 800732 27768268 ~ 27773076 (+)
hmbox1a LOC108270414,LOC108437743,LOC107751802 coding downstream 813932 27781468 ~ 27793212 (+)
G172099 NA non-coding upstream 7094 26867117 ~ 26960238 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding upstream 127854 26803056 ~ 26839478 (+)
G172052 NA non-coding upstream 177525 26789523 ~ 26789807 (+)
LOC117598331 NA non-coding upstream 280606 26625940 ~ 26686726 (+)
G171684 NA non-coding upstream 1188600 25682394 ~ 25778732 (+)
G172114 NA non-coding downstream 74 26967610 ~ 26968416 (+)
G172097 sptlc2,sptlc2b,LOC107747949,LOC107572124,LOC101069659,LOC107662183,LOC107728348,LOC107681046 non-coding downstream 6160 26973696 ~ 26973942 (+)
G172352 NA non-coding downstream 365868 27333404 ~ 27333880 (+)
LOC113533960 NA non-coding downstream 527366 27494902 ~ 27531363 (+)
G172405 foxn3 non-coding downstream 597770 27565306 ~ 27568639 (+)
LOC113534148 NA other upstream 1536403 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 1649055 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1789435 25176374 ~ 25177897 (+)
G171329 NA other upstream 1959566 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1966713 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 188807 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 757671 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1060464 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 1893926 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2086697 29054233 ~ 29138878 (+)

Expression


Co-expression Network