G172207


Basic Information

Item Value
gene id G172207
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26829318 ~ 26829729 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203813
ccctgctgtgcacgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcggcatctcatccagggtgtattcccacctttcccccagtgttcctgggatagactctggaacCAGCACCACCTTGAGCgtgataaagtgcttactgaagatgaatgaatgactgaatgaatgtgcATTGCAGCAGACCTTGTCACCACACatgatgtttgatttgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203813 True 226 lncRNA 0.50 2 26829318 26829729

Neighbor

gene id symbol gene type direction distance location
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding downstream 34399 26741374 ~ 26794919 (-)
si:dkey-288a3.2 LOC108270389 coding downstream 425329 26363066 ~ 26403989 (-)
LOC113534079 LOC108269777 coding downstream 507693 26312809 ~ 26321625 (-)
cx52.7 LOC108269563 coding downstream 1148577 25679314 ~ 25680741 (-)
manea LOC108270006 coding downstream 1159343 25664338 ~ 25669975 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding upstream 17117 26846846 ~ 26898308 (-)
ism2a ism2,LOC108413947,LOC107583490 coding upstream 99932 26929661 ~ 26955838 (-)
sptlc2a sptlc2 coding upstream 130094 26959823 ~ 26989620 (-)
alkbh1 alkbh1 coding upstream 168702 26998431 ~ 27003962 (-)
dio2 dio2,LOC107588276,LOC107751736,LOC107680786 coding upstream 653152 27482881 ~ 27489113 (-)
G172196 NA non-coding downstream 56268 26772132 ~ 26773050 (-)
G172016 NA non-coding downstream 233835 26595281 ~ 26595483 (-)
G171874 NA non-coding downstream 770809 26058245 ~ 26058509 (-)
G171864 NA non-coding downstream 851291 25977796 ~ 25978027 (-)
G171755 NA non-coding downstream 1050352 25773504 ~ 25778966 (-)
G172211 NA non-coding upstream 40618 26870347 ~ 26870619 (-)
G172212 NA non-coding upstream 65039 26894768 ~ 26959616 (-)
LOC113534208 NA non-coding upstream 87089 26916818 ~ 26920537 (-)
G172225 NA non-coding upstream 148737 26978466 ~ 27052034 (-)
G172635 nrxn3 non-coding upstream 636143 27465872 ~ 27491804 (-)
G171734 NA other downstream 1246791 25578939 ~ 25582527 (-)
G171569 NA other downstream 1569956 25258839 ~ 25259362 (-)
G171256 NA other downstream 1903094 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 2285239 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 3649807 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 735529 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 841894 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 1069753 27899482 ~ 27910890 (-)
G172919 NA other upstream 1082508 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 1968420 28798149 ~ 28860011 (-)

Expression


Co-expression Network