G172225


Basic Information

Item Value
gene id G172225
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26978466 ~ 27052034 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU203838
AAGAGGTAACcgctactaaaaaaaaaaaaaaaaacacaacgttgtgtgttttttgtctgctgggaaatgtcttttttttattttatttcactttcatGAAACGTTCTCACATTGATATTACTTTTTATGAAATGTAGACGGACTGATTTTTAAATCCCGCTCCCGTCTGCTCTCTGCTGTCcgttaaagataaataaaattcaaacaaaatcatttcattCAATTCCATCGTGATTTCGGATGCTGCCGAGGCCGTAGTTGAACGTGGTGGTTGAAGCTCTCAGACCCTGCTGCAGACATTGTGTCCTCGATCCAGGAAAAGTCTGGTCATGGAGCTGTAACGACGGCTCTGtcgatggacatgagcttccctGCTGCGCATGCTCAGTGTCAGAATCGATGATTTCAGCTGCCAGCTCATCCACAAGAATGCATTTTAAGAAGCAATACAGCCTTAAatctgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203838 True 465 lncRNA 0.41 2 26978466 27052034

Neighbor

gene id symbol gene type direction distance location
ism2a ism2,LOC108413947,LOC107583490 coding downstream 22628 26929661 ~ 26955838 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding downstream 80158 26846846 ~ 26898308 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding downstream 133331 26818900 ~ 26845135 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding downstream 183547 26741374 ~ 26794919 (-)
si:dkey-288a3.2 LOC108270389 coding downstream 574477 26363066 ~ 26403989 (-)
dio2 dio2,LOC107588276,LOC107751736,LOC107680786 coding upstream 430847 27482881 ~ 27489113 (-)
ston2 ston2 coding upstream 476829 27528863 ~ 27557994 (-)
kif13ba kif13b,LOC107583481,LOC107755780 coding upstream 742386 27794420 ~ 27842196 (-)
znf395a LOC108270040 coding upstream 830965 27882999 ~ 27892310 (-)
tfb1m tfb1m coding upstream 1005528 28057562 ~ 28087407 (-)
G172212 NA non-coding downstream 18850 26894768 ~ 26959616 (-)
LOC113534208 NA non-coding downstream 57929 26916818 ~ 26920537 (-)
G172211 NA non-coding downstream 107847 26870347 ~ 26870619 (-)
G172207 NA non-coding downstream 148737 26829318 ~ 26829729 (-)
G172196 NA non-coding downstream 205416 26772132 ~ 26773050 (-)
G172635 nrxn3 non-coding upstream 413838 27465872 ~ 27491804 (-)
LOC117598276 NA non-coding upstream 712571 27764605 ~ 27768101 (-)
G172782 NA non-coding upstream 735288 27787322 ~ 27787728 (-)
G172784 NA non-coding upstream 781498 27833532 ~ 27834840 (-)
G172925 NA non-coding upstream 881947 27933981 ~ 27936828 (-)
G171734 NA other downstream 1395939 25578939 ~ 25582527 (-)
G171569 NA other downstream 1719104 25258839 ~ 25259362 (-)
G171256 NA other downstream 2052242 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 2434387 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 3798955 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 513224 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 619589 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 847448 27899482 ~ 27910890 (-)
G172919 NA other upstream 860203 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 1746115 28798149 ~ 28860011 (-)

Expression


Co-expression Network