LOC113533960


Basic Information

Item Value
gene id LOC113533960
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27494902 ~ 27531363 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU204017
CCCGGCTGTGTTTAATTAAAGTGGTTTGTTTGGAAAAGTGCAGCAACCGGAAGTGTTAGAACgactttcagaaatgtttattaagaTAAAAACGGAGAGTAAAGGCGaacagagaggggagagagagttgGACAGAGCACAGTGACAagcaggagatgtttatttatttatttatttgtgtattgtttacATGGTGTTTTCCTGGGGCCTCGTCTCTGTGTTCAGCAGTaaactttggaaaaaaaagtgaggATTTAAATGCGACTGTTTTGCGGAATGGACAGCGGAATCTGACGGAAAAGGATTGCATCTCTCTTCAGATCAAGTCCTCAGACTGAGTTCCTCCATTTCCTCGCTGCTTCTCAAGACCAAACCATTTCACTGCTGAACGTTAAAGAATCTTGTATTAAAAGCCACGAGCCAATCTTGGATGCAACCATCAGCTTTGTCAACGCCATTAACGCTTGTACTGGTGAAGGTGAAAGAGGACAGTTCCCTTATCACTGCTGAGCGCACCGCCCTGTCTCCTCCTGCTCCTGGTTCTCCATCGTTCCCTCGTTCTTCTGCTCTATCTCCACCTACAGCAGAACACAACAAGTGAGGGAAATGGAGATGTAACGACAGACAGCACCCACCAGAGGGCAGTCACATCCTGCAAAATGGTAGAGCTGTGTGAACGCTGTACACACTCGACCAGGATATGGATTTGACGTCACTGCATCCAGAAGCTCATCCCTCACTGACCCCCTGCTATCAGAGGACCACCTCCTGCTAGGACACGGCTCGTGTGATAACACAAAGACCGAGACACTACAGACCCTTTTATCCCCGACCAAGGCCTTAGAGCAGTGTAAGTGAGTGAGTCTTCCTCAACCGCCACGCAGTTTCTAAAGCCCTCCTGTGAAGACGAGCCGGAATGGGAGCAGATGTTTGTGGGCGAGGACTCTAGCCACCTTAATGACATGTTTGGATTGCAGCAGGGAAAACAGCTCTGGCAGCTGAGACAGCAGGGCGCTGGAGGGTGACTGGCCGTCTTTCAGTGACTGTCAAATGGCTGATGATCTTTAGCAGGAAGTGGTTCTTTCCCAAAAGGCACACACATCACTCAAACGCAGCCAAATGTGCACCAACTGCAGCACAAACTACACACTGGGTTTGCGTAGATTCATCAGTACTTTAGTTGGGTTTAGTTTAGCTCgtttgtgtatatacacacacacacacacacacacacttgtttactCTGTTTCCACTGGTGTT
>TU204018
ACCTATATATAGTGATACATATCGTATATCGTAGAAGTGCTTTTGAGAAtggtgatatgatatttttgtcatatcgcccagccctacttGGAACACGTTTAGAATCAtgctataatttaatttaagctTCTTTAAGTGGATTTATTTGACACATCCAACATCAATTAATGCATGTGTTTGTTAGTCGcagtttattaatgctgaaatttatACTACAGTGCCGTTGAATTCTGCAATCTGAAACattagtgtttctatagtaacagctcattgacGGGGATTTGTACAGAGGACGcgccacataaacggatttaaaaagaTGCGTTTAATCGTTATGATGACATTtactggaaggagtctccagcgccagcaatttgtaacagtcagaggtacagcttttgttttccaacatcttcaggacagagattACGCTTTGTAGTTTCTCGAAAATGTgacgagctgcattttttttttggtctgaagttcaaaagagagaaagaggctggtgaaggaatgattaataataataatagttactgttaccacctgaagttgatttttttattactgtttcatCATACCCTCTCTCATTGATTATCCTATAACAGAATGacactgaatgttttatttctcacctAATGaggtaaataatgttagttaaggaACCCTTACGGTAATGATGGTGCCTTTTGTAAgtgtttaatatattaattattctaACAGTAAATCTTAATTTGAGTTTAAAACTGTAACAGTTCTCTTAGATACACTTTTGTGTAGTTTTCTAAGGAAAGCTGCTAGAAGGTTGGTCCAGGCTTCCTGGCTACAGTAGTTCTGTCGCTGTTTGATTGAGCATCGATGGTTGATCATGATCTTTTACAGataacttttatattttgtcaagtaacattgttttaaatacaaatttaattagTGGGGGGGGAAAAACTATATATAGGTAGGGTGCCAAGatttttgtacagtactgtaaattGTGTAGGCtttatatttttgctttaaGAAAGATCTGAACATAGACTCAGTTGTCCTGAATATTAGTGTATCCTGAAACTAAGGCTTGAAGCTGAGCTGACTAACCTGTTGTTGTTGTAACATGTACAACTCTTCTTCCCAGTTTCACTTGTGGTTCATTCCAAAAGTTTTCATAAAGTCATTATAacaaatatgtacaaaaatCCCATGCTgtcctttttattttaacatcatTGTTCAGTGTTTCCCATCATTCAAAGTGCAACTTTTAACCCAGGTGAAGGTGAAAGAGGACAGTTCCCTTATCACTGCTGAGCGCACCGCCCTGTCTCCTCCTGCTCCTGGTTCTCCATCGTTCCCTCGTTCTTCTGCTCTATCTCCACCTACAGCAGAACACAACAAGTGAGGGAAATGGAGATGTAACGACAGACAGCACCCACCAGAGGGCAGTCACATCCTGCAAAATGGTAGAGCTGTGTGAACGCTGTACACACTCGACCAGGATATGGATTTGACGTCACTGCATCCAGAAGCTCATCCCTCACTGACCCCCTGCTATCAGAGGACCACCTCCTGCTAGGACACGGCTCGTGTGATAACACAAAGACCGAGACACTACAGACCCTTTTATCCCCGACCAAGGCCTTAGAGCAGTGTAAGTGAGTGAGTCTTCCTCAACCGCCACGCAGTTTCTAAAGCCCTCCTGTGAAGACGAGCCGGAATGGGAGCAGATGTTTGTGGGCGAGGACTCTAGCCACCTTAATGACATGTTTGGATTGCAGCAGGGAAAACAGCTCTGGCAGCTGAGACAGCAGGGCGCTGGAGGGTGACTGGCCGTCTTTCAGTGACTGTCAAATGGCTGATGATCTTTAGCAGGAAGTGGTTCTTTCCCAAAAGGCACACACATCACTCAAACGCAGCCAAATGTGCACCAACTGCAGCACAAACTACACACTGGGTTTGCGTAGATTCATCAGTACTTTAGTTGGGTTTAGTTTAGCTCgtttgtgtatatacacacacacacacacacacacacttgtttactCTGTTTCCACTGGTGTT
>XR_003403471.2
TGGTTTGTTTGGAAAAGTGCAGCAACCGGAAGTGTTAGAACgactttcagaaatgtttattaagaTAAAAACGGAGAGTAAAGGCGaacagagaggggagagagagttgGACAGAGCACAGTGACAagcaggagatgtttatttatttatttatttgtgtattgtttacATGGTGTTTTCCTGGGGCCTCGTCTCTGTGTTCAGCAGTaaactttggaaaaaaaagtgaggATTTAAATGCGACTGTTTTGCGGAATGGACAGCGGAATCTGACGGAAAAGGATTGCATCTCTCTTCAGATCAAGTCCTCAGACTGAGTTCCTCCATTTCCTCGCTGCTTCTCAAGACCAAACCATTTCACTGCTGAACGTTAAAGAATCTTGTATTAAAAGCCACGAGCCAATCTTGGATGCAACCATCAGCTTTGTCAACGCCATTAACGCTTGTACTGGTGAAGGTGAAAGAGGACAGTTCCCTTATCACTGCTGAGCGCACCGCCCTGTCTCCTCCTGCTCCTGGTTCTCCATCGTTCCCTCGTTCTTCTGCTCTATCTCCACCTACAGCAGAACACAACAAGTGAGGGAAATGGAGATGTAACGACAGACAGCACCCACCAGAGGGCAGTCACATCCTGCAAAATGGTAGAGCTGTGTGAACGCTGTACACACTCGACCAGGATATGGATTTGACGTCACTGCATCCAGAAGCTCATCCCTCACTGACCCCCTGCTATCAGAGGACCACCTCCTGCTAGGACACGGCTCGTGTGATAACACAAAGACCGAGACACTACAGACCCTTTTATCCCCGACCAAGGCCTTAGAGCAGTGTAAGTGAGTGAGTCTTCCTCAACCGCCACGCAGTTTCTAAAGCCCTCCTGTGAAGACGAGCCGGAATGGGAGCAGATGTTTGTGGGCGAGGACTCTAGCCACCTTAATGACATGTTTGGATTGCAGCAGGGAAAACAGCTCTGGCAGCTGAGACAGCAGGGCGCTGGAGGGTGACTGGCCGTCTTTCAGTGACTGTCAAATGGCTGATGATCTTTAGCAGGAAGTGGTTCTTTCCCAAAAGGCACACACATCACTCAAACGCAGCCAAATGTGCACCAACTGCAGCACAAACTACACACTGGGTTTGCGTAGATTCATCAGTACTTTAGTTGGGTTTAGTTTAGCTCgtttgtgtatatacacacacacacacacacacacacttgtttactCTGTTTCCACTGGTGTTTAAACAGCAGCTTTAATAAAGAGCATGAGTGCAGCCAACCTGAGTgtgcagagcagtatcagcaTGTAGTCATTAAAAACAAGATCAAGGTGCTGTGATTGATTTACACACTCAAAGGTATTCACGAGGGTGCAGAGAAAGTGTCACGAGCAAGCGCACTTCATTTCTGCGAGCACCGAGACCTGCACGTCCAAGTTCATTTTTAAGACTTAGTTTTCTCCCCCCACACAATCAAACATTCCCCTTTCTTCTGAAAACACAGACCTTGCTGTAATTCAAAGAAAATTTTCCAAAATGGAGGCGAAGAAAGGGAGAGAtcacaaatttaattttaatgttagcTTCAGCTACGCACACGGCCTAATGTATGTAGCCtaacattatacaaataaacatgATAGCCTacagatatacactcaccatctactttaataggaacacctgtacacctgctcacttatgcagttatccaaacattcaatcatgtggcagcagcacaatgcataaaatcattcagataaAGGCCAAGGTCTCCAGGTAATGtgcacatcaaacatcagaatgggggaaaagtgtcacttttccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204017 False 1260 lncRNA 0.48 5 27494902 27530777
TU204018 True 2058 lncRNA 0.41 2 27527675 27530777
XR_003403471.2 False 1825 lncRNA 0.45 5 27494923 27531363

Neighbor

gene id symbol gene type direction distance location
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding upstream 368997 27007934 ~ 27125905 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding upstream 488153 27004109 ~ 27006749 (+)
trnat-ugu_12 NA coding upstream 579472 26915358 ~ 26915430 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding upstream 580673 26903639 ~ 26914229 (+)
vrk1 vrk1 coding upstream 1075695 26405390 ~ 26419207 (+)
tdp1 tdp1,LOC102776284 coding downstream 195515 27726878 ~ 27760866 (+)
kcnk13a kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770 coding downstream 236905 27768268 ~ 27773076 (+)
hmbox1a LOC108270414,LOC108437743,LOC107751802 coding downstream 250105 27781468 ~ 27793212 (+)
pnoca LOC108270041 coding downstream 336877 27868240 ~ 27881903 (+)
map7a LOC108270039 coding downstream 383041 27914404 ~ 27927660 (+)
G172352 NA non-coding upstream 161022 27333404 ~ 27333880 (+)
G172097 sptlc2,sptlc2b,LOC107747949,LOC107572124,LOC101069659,LOC107662183,LOC107728348,LOC107681046 non-coding upstream 520960 26973696 ~ 26973942 (+)
G172114 NA non-coding upstream 526486 26967610 ~ 26968416 (+)
G172118 NA non-coding upstream 527366 26967332 ~ 26967536 (+)
G172099 NA non-coding upstream 534664 26867117 ~ 26960238 (+)
G172405 foxn3 non-coding downstream 33943 27565306 ~ 27568639 (+)
G172414 NA non-coding downstream 50355 27581718 ~ 27673480 (+)
G172422 foxn3,LOC107680774,LOC107751738,LOC107755777 non-coding downstream 91110 27622473 ~ 27652164 (+)
G172408 NA non-coding downstream 102569 27633932 ~ 27636361 (+)
G172719 NA non-coding downstream 263019 27794382 ~ 27799180 (+)
nrxn3a nrxn3,LOC107583487 other upstream 27336 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 2063973 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 2176625 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 2317005 25176374 ~ 25177897 (+)
G171329 NA other upstream 2487136 25003983 ~ 25007766 (+)
trnak-uuu_7 NA other downstream 193844 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 496637 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 1330099 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 1522870 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 1538357 29069720 ~ 29073089 (+)

Expression


Co-expression Network