G172408


Basic Information

Item Value
gene id G172408
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27633932 ~ 27636361 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU204056
TGTGAAATAGAGGTAAAATCTGGCACGGGTaacattatgaaatgaaaagccACTTTAGTGCTTAACCTTACCGTAATGTTCATCCAAAACTAGTGTGTATTCTATCCAGTATTAGTGTATAGATTTCCTCATCTCTAAGATATTATCGCTTCTACAGTTACTTTACACAGGAACTTGACATGACACTCACTCTatgtaatctaagactaataacacACAGATTAAAACGTTGTTTAACAAAGCAAGACTTTATCGTTTTCactgatatggtaaagttttctgtaaggagatgtttatttaacatttaagaaaggagtctccagtgtcagtgctttgtaacagtcagaggtaaagccgtaagttttctgacatcttcaggacagaagattttacgttttgtgttttctctgtaacatgacaagctgtgttttttttcgtcttattaacGTAAGACAGGGAATAAAGAGAGAGtggtgagggaacaaatgtttatagctgctgtaacgtaactgacaacaggaactaacttgttccacaacattaaatgttccataatattaaatgtaactataaacagattaaaaaagtatgaaatgtcattttttaattaataaccagagcaattgttggcaaattgctgtgttataagaagaatataacacttggggaTGTGTTATTCCTTTCTTATAGGAAGCTTAAGGTCAGGCAATATCAGCTAACACTCAGTGTTAAggattattaattaaaaaggcCACAGTTACGTTTGAGATATTGATGTTTGGGCTAGTGAGAACCAGTGCCTGGCTAATAAATTTGGAAAAGAAACTTGTGACTAATGAGCTACAGAGTTAATTTCATTCccagcaggttagcattttaaTCTACAGGACATGAAGAACTGAAGAACTGACCATGTGGATGCAGAAATTCTGGCCACGTCTCTGATCGTTTTAATAAGCTCTCTTAATCTTCGCTTGCTAACCTCTTAGACCTGCGCAAAGCTGTCGTGGATTAAGACGACAAGATCCAgaaatcacacagatacagtaAAGCAGATTATAGAGAGTGTTGCACCTCAGAACTGAGGGTTCATTACAGCTGAGACAAAGACATGATAAAGTCTGTAACCGCATGAATTTTCCCCTTAGACGTCATTAAGCTCCATTACAGCTCGTTTGTGCTGTTTGAGATGCAGGTTCTTATCCATGCTCTCTTCCCAGCTCTCTGTTGCCTAGGAGTAGAGGTGCAGGCTGGCTGCCGCGGCAACTGTGTCACCACGGTTACCCAGAGGCGCCCGGGCGTCCGTTTCCATAGCAACGACGGCGGCTGGGTCGGGGTGACAGGCTTCGTTAATTCTTTCGCCCGTGAACCCCAGGGGAGCTCCGCCATTTGTCCTCATTCCCACTGGTCTTTGACATCGTATTAAGAGTATTATTTTTGCACCGAGGTTTGAGTTATTACCCCCAatttttcccctcattctgCCATCATTTATCGAGGGTACATGGCATAAAGTGGTACAAATTGAAGAAAAACCTTCAGAGGAATGCCGTAATGGCTTTCTTGTGCCTGCAGATTTTCGGGTTTAATGCAAAATATTGTACATTTCTGTTTCTCGTCTCTCGCTGCGGCAGATAATCACATCCCTAAGGCTGAGAGCTGAGCTGCaaggtgaggtcacacactctataaaatAACACCTGACCTCTGCACGGCCTTTACCCGGTGTCCTTGTCCGCTCCAGGCACGCGATTACTGTCCAGCATTAACACGGTGTGTAAAGCCAGAGGCAGTGTGGACATAAGGGACGATGGAGATTTTGTGAGCTCGGCTTCAGTACATATGAAGTGGATGAGAGCGACGGCGCTGGTATGAAGGACATCGAGCAGATCGGTGTGTTGTGCGTGTTGTGTGTCGGTGTGTAATGAGTTTTACAGCACACTGCATGGCTTTATTATTCACTGCAGGATAATTGAGATTCTGTCTCGCTTATTGTGCTTTGGTCTGGATCAAGTGCTGGGTCAGCATCTTCAGCACAGAGACGCACTAAAGCCTAGAGCTGAGCTTCATGCtgcgctgttacaggaaaataatcaacgacggagtggtgtgatgaagcagagttactgataccataacaaacttatttatttttctataagagcatgcCCGGATgcattcctcttattccacagcaactCTCCAGCACAATtcgctgttttatttattaaggaacgACACATACCTAacctgaaactggagactccttccataaatgttaaataaacatctcctcacagaaaacttcaccatatcaacgattaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204056 True 2326 lncRNA 0.42 2 27633932 27636361

Neighbor

gene id symbol gene type direction distance location
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding upstream 508027 27007934 ~ 27125905 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding upstream 627183 27004109 ~ 27006749 (+)
trnat-ugu_12 NA coding upstream 718502 26915358 ~ 26915430 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding upstream 719703 26903639 ~ 26914229 (+)
vrk1 vrk1 coding upstream 1214725 26405390 ~ 26419207 (+)
tdp1 tdp1,LOC102776284 coding downstream 90517 27726878 ~ 27760866 (+)
kcnk13a kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770 coding downstream 131907 27768268 ~ 27773076 (+)
hmbox1a LOC108270414,LOC108437743,LOC107751802 coding downstream 145107 27781468 ~ 27793212 (+)
pnoca LOC108270041 coding downstream 231879 27868240 ~ 27881903 (+)
map7a LOC108270039 coding downstream 278043 27914404 ~ 27927660 (+)
G172405 foxn3 non-coding upstream 65293 27565306 ~ 27568639 (+)
LOC113533960 NA non-coding upstream 102569 27494902 ~ 27531363 (+)
G172352 NA non-coding upstream 300052 27333404 ~ 27333880 (+)
G172097 sptlc2,sptlc2b,LOC107747949,LOC107572124,LOC101069659,LOC107662183,LOC107728348,LOC107681046 non-coding upstream 659990 26973696 ~ 26973942 (+)
G172114 NA non-coding upstream 665516 26967610 ~ 26968416 (+)
G172719 NA non-coding downstream 158021 27794382 ~ 27799180 (+)
G172741 NA non-coding downstream 204625 27840986 ~ 27842183 (+)
G172858 NA non-coding downstream 465146 28101507 ~ 28108665 (+)
G172830 NA non-coding downstream 482701 28119062 ~ 28122832 (+)
G172873 NA non-coding downstream 512216 28148577 ~ 28191912 (+)
nrxn3a nrxn3,LOC107583487 other upstream 166366 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 2203003 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 2315655 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 2456035 25176374 ~ 25177897 (+)
G171329 NA other upstream 2626166 25003983 ~ 25007766 (+)
trnak-uuu_7 NA other downstream 88846 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 391639 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 1225101 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 1417872 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 1433359 29069720 ~ 29073089 (+)

Expression


Co-expression Network