G172635 (nrxn3)


Basic Information

Item Value
gene id G172635
gene name nrxn3
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27465872 ~ 27491804 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU204297
tgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgttttcatgacTTCAGAGTCTCTCTTCATGTTAAcgtcaattttttttcttcatgaagCACACGGAATAAGATGATCATGATGATCTCTCTGTACAATagaattactaaaaaaaatacaactcaAGTTCAATATGTACATTATCTACCTAAAAAGTACAACTGctatcatcatatcatcataatgtaataaaatatgtaaacaaacttttttttttgtcgtttgACACAGTCGACTGTGACAACAGATAGAATTCACACTTTTCACGTTAGATTTATTTTTCCGTATAGACATCCGTAACAGCGTTATAGTAGGAGTGCCAGTGCGCACCAGACAGCTTTTCAtaaaaaagagaacaagagGAAGTGGACCAACATACATCATGATCGCAAAAAAGATCAAAGCCGGCACCGGCCGCGCAGGAAACGTGACGTTCGTCAGCGTCGTTGTCACGTTgagaggggaggaaaaaaaaactaggaaAAGATGTGTCTGATGGATTGACTGGCCTGGCAGATCTGTTCAGCCTCAGCTGAACGTCATACATCGTAGTGTAAAGATGGCATGCATTACAATCAGTCGCTTTACTGAGACAAAGATAAAATGCACCACTTCGCTCAAattcacaaattattattattttttctcaaACGTCACAGTCGGTTGTAAAATCCGAATCATTTGGTCGAGTTTTGAATAACAGTGCTGCGAGAGTGTCAGTGAGCTGTCCTCGCTCGTCTGATTTCATTTACTACATTGATTTttcactcttcttttttttctctttttttgcagagagcaaaaaaaattgacaccacatataatgtataaacaatacaaatctttcatatgtatttatatatatattttttggcaAGAGTCCTTCTTTCTCattcacacaatatatatatatatatatgcatttatatatattttgtccATCTCTTATAACACTATGTGTCACTCACATGCTTGCAATGGCCGGAATAATTTTCTCcttgctctctcactctctctcactttttttctttttttttttttacaggataaaaaaaatgccaagGATCACATACCTTTTTAAAAGTCACTTTTTTTAGGATAATGATGTAGCTGTGAAGTATTCTACACTGATAACGCCGTTGACCGGATCGAAGAATAAAGGTCACTAATGTCGCTATTTACCATCGTGGTATGCTTACACAATAGTGTGCTTTATATTACAGTTGGTGTGTGAGCTCAGTGCCTCAGCACAGTGCCAAAatgaaaatctctctctctctctctctttctgtcagcgCAGCTCCTGATACGCCTCAGCGTCACCCGTTTCACTGTCGCGCAGTCTCACACGTAATATTCCTTGtccttgtttttctgtttcttgttGCTGCCTTTCGAGCCGTGCTGCTTGTCCTTCATGACCGCGCCGTTGCTCTGCGCTGAGTTGGTTATGTAATTGCGGCTCTCGTCCACTTGGTACGACCCCTCGTCCCTGTTTCTGTACTTATACATGGCGTACAGGAGGATGAGGATGCACAGAGCGGCAGCAGCAACTATCCCGACGACCATTCCAGTGGTGCTGCTAGATTCCCGGACGACCTCGGAGGCCCCGGGAACGCGCCTGACGCCCGGCTCCGTGGGGATCGCTGTGGGTACATTACGGAACATGGGGGAGGTTATTAACGGGCTCTTCGGCTTTTTGCGGTCTACGTCATAGGAAGTGGGCAATGGACGCAAGACTATGTCAGGTTGGGGTTTAAGCTCTCGGTTATTCATTTTGCCCGCAGGCCATTTGGGCGGCGCTGCGGCAGcagaggtggtggtggtggtggtggagcgGCTCGgcttggggaaaaaagatgCGGTAGTAGTCCTACCGTGCTCGGAGGCTTTGTTAGGTCTAAAGTCCTTGGCTTCCCACTTAGGCGCATGAGCTTTGTAGC

Function

symbol description
nrxn3 Predicted to enable calcium channel regulator activity. Involved in several processes, including learning; social behavior; and vocalization behavior. Predicted to be located in GABA-ergic synapse. Predicted to be part of protein-containing complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204297 True 1995 lncRNA 0.43 2 27465872 27491804

Neighbor

gene id symbol gene type direction distance location
alkbh1 alkbh1 coding downstream 461910 26998431 ~ 27003962 (-)
sptlc2a sptlc2 coding downstream 476252 26959823 ~ 26989620 (-)
ism2a ism2,LOC108413947,LOC107583490 coding downstream 510034 26929661 ~ 26955838 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding downstream 567564 26846846 ~ 26898308 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding downstream 620737 26818900 ~ 26845135 (-)
ston2 ston2 coding upstream 37059 27528863 ~ 27557994 (-)
kif13ba kif13b,LOC107583481,LOC107755780 coding upstream 302616 27794420 ~ 27842196 (-)
znf395a LOC108270040 coding upstream 391195 27882999 ~ 27892310 (-)
tfb1m tfb1m coding upstream 565758 28057562 ~ 28087407 (-)
LOC113533853 LOC108269710,LOC108269711,LOC108269709,LOC108269705 coding upstream 603993 28095797 ~ 28106204 (-)
G172225 NA non-coding downstream 413838 26978466 ~ 27052034 (-)
G172212 NA non-coding downstream 506256 26894768 ~ 26959616 (-)
LOC113534208 NA non-coding downstream 545335 26916818 ~ 26920537 (-)
G172211 NA non-coding downstream 595253 26870347 ~ 26870619 (-)
G172207 NA non-coding downstream 636143 26829318 ~ 26829729 (-)
LOC117598276 NA non-coding upstream 272801 27764605 ~ 27768101 (-)
G172782 NA non-coding upstream 295518 27787322 ~ 27787728 (-)
G172784 NA non-coding upstream 341728 27833532 ~ 27834840 (-)
G172925 NA non-coding upstream 442177 27933981 ~ 27936828 (-)
G172903 scaf8 non-coding upstream 469165 27960969 ~ 28044248 (-)
G171734 NA other downstream 1883345 25578939 ~ 25582527 (-)
G171569 NA other downstream 2206510 25258839 ~ 25259362 (-)
G171256 NA other downstream 2539648 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 2921793 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 4286361 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 73454 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 179819 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 407678 27899482 ~ 27910890 (-)
G172919 NA other upstream 420433 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 1306345 28798149 ~ 28860011 (-)

Expression


Co-expression Network