LOC113533782 (cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299)


Basic Information

Item Value
gene id LOC113533782
gene name cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28028000 ~ 28071081 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU204556
AAAGACTTTTCTGTCATCATGTTCACCGCTTATCTGTAATTCTGGATTTAAATCCGGCTTTTTGAAGCTGTTTAAAGTTTATAGACgtggagatgtttttttttttttttttttttttttttttcttttttttttttttttgaaacccACGTCAATACTCACTGCTATGGAAACCGAATCCCGCACCCAAATATGCGTGTACGTGTGTCTGGAGGTCTGTGTGAGTCAGTGAGCTAGAGGGGaaagagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttgtgtattcagCTGTTTAGAAGTCAACTCAGTTTCATTCGACGATCCAAAGAACCCTCCAGAACACACTCGGGTGCGAGGAGCTAACCTGAGCGCTGGACAGTGAAGGCAGTTCGGACGTCCAGAATATTATGATGAGGTGGAATTTTCATGGCAGTGATGCTGATATTGACGCTGGCACTGACGCGTTTTCTCCCCCTTTATGATTTGGGCCGGTTCCCATCAGCAGTGCATCTGCCGTCAGATTTGCACCAGCAGGAGATGGCTCTTCATCTCAAGCTCCAGTGATTTCTCAGTGCCATACTCATCCTCTCACACAGTCCTCATTCCCTCCATGGCCATATGCAAAGGTGCAGACATCGGCAACACGAAAACGGTAGCaaagatttttaaagaaaatttaagTCCAGTTATGTTACAAAAGGTTTAGCAAAGAATTAGCAACCATCATCACTATGGTAAAGATACAGCTAAACCGTAAATGTTGGCACCCCTGCATATGGATGCTACCTTGCATACTGGTTTTTATCCAGTgcatcaacaccatcaccatttcttggtgtgttaatgttgtactataggagtgtgtgtttgctttctcAGCCTTCGTCTTCAACATGCCTTCCTGCTCTGCTGAGACAAGGAATTTATTCCATGTTGCTCTGAGCTGGCAAAGCAAGCCCTGGCCCTGATGGATGGCACAGCGCATTCTTCCTCTCGAGCAGATTCCCACAGGCGAGCAGATGGCTCTGCCCAGCTTCTCCCTCCTGCAGGCATCCGTGGGCGTGCTGAGTGGGCACGGAGATGCCCTCCTGGGGCGGATTACTCCACCCCTCAGCCCACGATGCCAGCGCTCGCGCCATAATGACTAGCATTACTCGACGCAATAATTTTCTCCTCCTCATGCCTTGTTGATCTGCCCATACACTGCCATTGTTTCAGCTGTGAATGTGCCAAATCCATggtatttatatacacacacacacacacacacatatatataaatgtactgTTATTTGATGTAACAGTTATTTAACGAATCCTCCATCTTGTCAGGTTCAACACGGACGTTTACATAACTCCAACAAAGCAATCATTTCATGTTCATAAGCCATTTCCATTCACCACTTCaggatattttttaaatatttctcatGCTTTGGGATTCCTTTCTGCAAAGTTCTGTGATGcagtatattatttacattatatatatatatatacacatatatattatctatatatatcttcTCGCCAGTTTGGCAGcttgattgatttgattttggTTTTTGTTGAAGAGAATATACGTATATATGCAGTTCTCAGTTTTAA
>XM_026926115.2
agagcagagcgaTGCCGCTCTCCTCCTCAGATCTCCCTCCCTCACCGTCTcgttttttcctcctctccgAGGCACGGCTCTTCCTTTCATTGTGAGcaataaaaaaaggaacagtGCACAACAAGCCACAACAAGCGCTTGAGCGGAGGAGTGTAAATTTCTGGATCTTCTTGCTCGTGAATGAAGAGCACCATATGGGCTGTTTTATCGTTTCTTCCTGGTGGATAGATTGAGGGATAATCTCAGGACTCAGGAAAAACGGATACTGACATGGTAACGTCAAGACGACCGTCATCAACTACATCTCAAACAGGAAGGCTCTGGTGCTGAAGAGGACAGGACGCCTAGACGAGCGCCCGTGTGAATGGTGTCCAGGCAGACGGATAGGTCAAGATGGCGTCCACGGGCACGCAGATCTTCGGCTTTGTGCTGGCACTGCTGGGCATTCTGGGCGCCACGGTGGCCACGCTGCTGCCCAACTGGAAGGTGAGCGCAGACGTGGGCTCGAGCATCATCACCGTCATCTCGCAGATGCAGGGCCTGTGGATGGACTGCACCTGGTACAGCACGGGAATGTTCAGCTGCACGCTCAAGTACTCCGTACTGGCGCTGCCTGCGTACCTGCAGACGGCGCGCACCACCATGGTGCTGTCCTGCGTCCTGGCTGCGCTCGGACTCTGCCTGGCGTCGCTCGGGCTCAAGTGCACGCACTGGGGCGGCGGTAGGAGAGCAAAACGTCACGCTGCACTAGCGGCCGGAGTCTGCTTCGTAGCCTCTGGGTTCTTGTGCCTGGTGCCTGCGTCGTGGTACACCAACGAGGTCATCGCCAGCTTTCTGGACGCCAGTGTACCCGAGAGCAACAAGTTTGAACCGGGCGGCGCGGTCTACGTCGCGTTCGTCTCGTCCGGTTTGCTTCTCGGCGGCGGCTTCATCTTCTGCCTGTCGTGCTCGGGCAAGCGCCACGGCCCTCAGGATCTCGTCCTGCTGCCTCCGGATAAACTCTTActccagcagcagcaacagcagctccTCCAGCAGCAGCACTTAGACCAGCTCCAGCACCAGTACTGCACTCTCTCGCCTCTGGATAATAAGACGGGATACAGCCTGCAGGACTACGTGTAACGGAAACACGGGAGAGCAGGACGATGACTGCGACACACTcttcccccctcctcctcctcctcctcttctacAAGCACAAAATGGTGGAGGAATTCCCAAAGTTTCAGAATGGACGAGTTGTGAATAACTGATAAGCGATGTCGGAGTGAGCGGACGACAAATAAAACGCAGATCTCCTGCATCTGAGTATTAAAGGTTTCCTGGGAAGTGGATTAGTCAGATGGAAATACCCTCCATACGGAGttagggatgcatcgataccaTTATTTTAATACCGACTCCAATAACCGAAATGAGTAACCGATTTAGTATTAATCCATCAGAGGCGTTGAGGAACATTTTCTTCGGCGCTGTTTATGCTTCCCCGGTATAATTCGTGGCCATAAAAAACgtgttcactcactcacaccatTCGACTCGTTCTTTATCACATTAGCTAGTTGATTTTAACTCTAGTGAATTAGCTTAGCTACTATAGTCAGCGCGTTTTGTTTGCGCTTCTGCGCTAAATAAAGTACGTTTTTGTCTTCACTGCGTCAAAATTCTTCGTTGTTGACGACTGATAGTGGCTGATCTCATGTAAGAACAACATGCTGTTATTCAAAGAACCGTTTCACGTACCTTGCGTTATCTGTAGACGGTTTTTCTCGCCTAGCCAGTGTTTGCTGCTAGCAGTGAACTGcttgtgctgagttttatgtttaaagatattttacttatattgtaggaagatgctgtagttcctcctcttgatattttctgTATGCAGTCTGTTCGCATTAATTGTGAAATGCAGCCGTATCGCTGTTAATTCGTCCCGTCTGTCATTACATACGCTTGGTTTACGCTGCATACTGTCACCTGGCATCGGCAGGacatttattacaaatacaagTAAATGGGTGCGGTATGGGACCAATACCAGTGCaggtatcgatgcatccctacTCATAACCCCTTCCCCAAAGATTAGAAATGAAAAGCAATCAGCTAGCTGCTAACGATGTTTTCGTAACCTCTGCTCAAAGTAAGTCGGCAATACGTCCCCTAAAGGCAATAGTATGGGaaagccagtttttttttttttccatttctttttactCTCCGGCCCTGTCCGTTTGAGTAATAGTAGAACTAATGAAATCTCTTGTCTTATTCTGTTAGCTGATAGAATGATTGATATGATTGTTGCCTCAGCATGCTGTTCGGAGCCTGTGCATAATGCAGCGGAATGCCTGGTAGAGACTTGAGTCATAGCCACATTGCCTGTGCCTAAAcgcgagaaaaaaaaaaaacctagaacGTTATAGCGAgccagttgttttttttggggagAAACGTGATTAGAGAGTGAATGGAGCTGCTGGGTCTGGAatgataccacacacacacacacacacacacacacacacactccagcacatTGACAATAGAAtatgatgtctgtgtgtgatgtgttttttggTTAAGCTTGCTCAGTGCATGCTGCTTACAGCTttatctcacactctcacacactctctctctcacacaccacacacacacacacagagttagctgcatgtgtgctttttcttttttttttttttttgaaacccACGTCAATACTCACTGCTATGGAAACCGAATCCCGCACCCAAATATGCGTGTACGTGTGTCTGGAGGTCTGTGTGAGTCAGTGAGCTAGAGGGGa
>XM_026926116.2
agcgggagagagagggagcgggGATGTCCTCTCCTGCTGCTGAGGAGAATATGGACGCTGTATCCGCGCGCTTTAAACCCGCAGCATTGCTCATACCGCGTGTTTTCATTGTGtttgcggtgtgtgtgtgtgcacgcgagTGTGTGTTCgtgcgtgcttgtgtgtgtagctcTGCACCAGCCCGAGGAAGGCTCTGGTGCTGAAGAGGACAGGACGCCTAGACGAGCGCCCGTGTGAATGGTGTCCAGGCAGACGGATAGGTCAAGATGGCGTCCACGGGCACGCAGATCTTCGGCTTTGTGCTGGCACTGCTGGGCATTCTGGGCGCCACGGTGGCCACGCTGCTGCCCAACTGGAAGGTGAGCGCAGACGTGGGCTCGAGCATCATCACCGTCATCTCGCAGATGCAGGGCCTGTGGATGGACTGCACCTGGTACAGCACGGGAATGTTCAGCTGCACGCTCAAGTACTCCGTACTGGCGCTGCCTGCGTACCTGCAGACGGCGCGCACCACCATGGTGCTGTCCTGCGTCCTGGCTGCGCTCGGACTCTGCCTGGCGTCGCTCGGGCTCAAGTGCACGCACTGGGGCGGCGGTAGGAGAGCAAAACGTCACGCTGCACTAGCGGCCGGAGTCTGCTTCGTAGCCTCTGGGTTCTTGTGCCTGGTGCCTGCGTCGTGGTACACCAACGAGGTCATCGCCAGCTTTCTGGACGCCAGTGTACCCGAGAGCAACAAGTTTGAACCGGGCGGCGCGGTCTACGTCGCGTTCGTCTCGTCCGGTTTGCTTCTCGGCGGCGGCTTCATCTTCTGCCTGTCGTGCTCGGGCAAGCGCCACGGCCCTCAGGATCTCGTCCTGCTGCCTCCGGATAAACTCTTActccagcagcagcaacagcagctccTCCAGCAGCAGCACTTAGACCAGCTCCAGCACCAGTACTGCACTCTCTCGCCTCTGGATAATAAGACGGGATACAGCCTGCAGGACTACGTGTAACGGAAACACGGGAGAGCAGGACGATGACTGCGACACACTcttcccccctcctcctcctcctcctcttctacAAGCACAAAATGGTGGAGGAATTCCCAAAGTTTCAGAATGGACGAGTTGTGAATAACTGATAAGCGATGTCGGAGTGAGCGGACGACAAATAAAACGCAGATCTCCTGCATCTGAGTATTAAAGGTTTCCTGGGAAGTGGATTAGTCAGATGGAAATACCCTCCATACGGAGttagggatgcatcgataccaTTATTTTAATACCGACTCCAATAACCGAAATGAGTAACCGATTTAGTATTAATCCATCAGAGGCGTTGAGGAACATTTTCTTCGGCGCTGTTTATGCTTCCCCGGTATAATTCGTGGCCATAAAAAACgtgttcactcactcacaccatTCGACTCGTTCTTTATCACATTAGCTAGTTGATTTTAACTCTAGTGAATTAGCTTAGCTACTATAGTCAGCGCGTTTTGTTTGCGCTTCTGCGCTAAATAAAGTACGTTTTTGTCTTCACTGCGTCAAAATTCTTCGTTGTTGACGACTGATAGTGGCTGATCTCATGTAAGAACAACATGCTGTTATTCAAAGAACCGTTTCACGTACCTTGCGTTATCTGTAGACGGTTTTTCTCGCCTAGCCAGTGTTTGCTGCTAGCAGTGAACTGcttgtgctgagttttatgtttaaagatattttacttatattgtaggaagatgctgtagttcctcctcttgatattttctgTATGCAGTCTGTTCGCATTAATTGTGAAATGCAGCCGTATCGCTGTTAATTCGTCCCGTCTGTCATTACATACGCTTGGTTTACGCTGCATACTGTCACCTGGCATCGGCAGGacatttattacaaatacaagTAAATGGGTGCGGTATGGGACCAATACCAGTGCaggtatcgatgcatccctacTCATAACCCCTTCCCCAAAGATTAGAAATGAAAAGCAATCAGCTAGCTGCTAACGATGTTTTCGTAACCTCTGCTCAAAGTAAGTCGGCAATACGTCCCCTAAAGGCAATAGTATGGGaaagccagtttttttttttttccatttctttttactCTCCGGCCCTGTCCGTTTGAGTAATAGTAGAACTAATGAAATCTCTTGTCTTATTCTGTTAGCTGATAGAATGATTGATATGATTGTTGCCTCAGCATGCTGTTCGGAGCCTGTGCATAATGCAGCGGAATGCCTGGTAGAGACTTGAGTCATAGCCACATTGCCTGTGCCTAAAcgcgagaaaaaaaaaaaacctagaacGTTATAGCGAgccagttgttttttttggggagAAACGTGATTAGAGAGTGAATGGAGCTGCTGGGTCTGGAatgataccacacacacacacacacacacacacacacacactccagcacatTGACAATAGAAtatgatgtctgtgtgtgatgtgttttttggTTAAGCTTGCTCAGTGCATGCTGCTTACAGCTttatctcacactctcacacactctctctctcacacaccacacacacacacacagagttagctgcatgtgtgctttttcttttttttttttttttgaaacccACGTCAATACTCACTGCTATGGAAACCGAATCCCGCACCCAAATATGCGTGTACGTGTGTCTGGAGGTCTGTGTGAGTCAGTGAGCTAGAGGGGa

Function

symbol description
cldn20 Is expressed in brain; gill; kidney; spleen; and testis.

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
TU204556 False 1621 lncRNA 0.43 2 28028000 28071081
XM_026926115.2 True 2818 mRNA 0.49 2 28060576 28069703
XM_026926116.2 False 2691 mRNA 0.50 2 28066519 28069703

Neighbor

gene id symbol gene type direction distance location
scaf8 scaf8,LOC107749595,LOC107675315,LOC107572866,LOC107728963 coding upstream 64880 27931174 ~ 27963120 (+)
map7a LOC108270039 coding upstream 100340 27914404 ~ 27927660 (+)
pnoca LOC108270041 coding upstream 146097 27868240 ~ 27881903 (+)
hmbox1a LOC108270414,LOC108437743,LOC107751802 coding upstream 234788 27781468 ~ 27793212 (+)
kcnk13a kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770 coding upstream 254924 27768268 ~ 27773076 (+)
ptp4a2a ptp4a2a,LOC108269715,LOC107680006,LOC107564961,LOC108413228,LOC107583452 coding downstream 51922 28123003 ~ 28127853 (+)
ppp1r13ba LOC108269703 coding downstream 57638 28128719 ~ 28165654 (+)
sdsl sdsl,LOC108413229 coding downstream 95072 28166153 ~ 28170563 (+)
daam1a daam1,daam1a,LOC108269704,LOC107725326,LOC107751774,LOC107693144,LOC107679992 coding downstream 110019 28181100 ~ 28208862 (+)
jkamp jkamp,LOC107693092,LOC107564966,LOC107751812 coding downstream 146611 28217692 ~ 28225654 (+)
G172741 NA non-coding upstream 185817 27840986 ~ 27842183 (+)
G172719 NA non-coding upstream 228820 27794382 ~ 27799180 (+)
G172414 NA non-coding upstream 354520 27581718 ~ 27673480 (+)
G172422 foxn3,LOC107680774,LOC107751738,LOC107755777 non-coding upstream 375836 27622473 ~ 27652164 (+)
G172408 NA non-coding upstream 391639 27633932 ~ 27636361 (+)
G172858 NA non-coding downstream 30426 28101507 ~ 28108665 (+)
G172830 NA non-coding downstream 47981 28119062 ~ 28122832 (+)
G172873 NA non-coding downstream 77496 28148577 ~ 28191912 (+)
LOC113534053 NA non-coding downstream 165592 28236673 ~ 28244726 (+)
LOC117598375 NA non-coding downstream 318115 28389196 ~ 28435398 (+)
trnak-uuu_7 NA other upstream 302721 27725207 ~ 27725279 (+)
nrxn3a nrxn3,LOC107583487 other upstream 560434 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 2597071 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 2709723 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 2850103 25176374 ~ 25177897 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 790381 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 983152 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 998639 29069720 ~ 29073089 (+)
nrde2 NA other downstream 1022383 29093464 ~ 29138776 (+)

Expression


Co-expression Network