Item | Value |
---|---|
gene id | si:ch73-204p21.2 |
gene name | NA |
gene type | misc |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047604.1 |
NCBI id | CM018550.1 |
chromosome length | 29376037 |
location | 27899482 ~ 27910890 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
id | description |
---|---|
ko00512 | Mucin type O-glycan biosynthesis |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU204658 | True | 2737 | TUCP | 0.41 | 7 | 27899491 | 27910890 |
TU204659 | False | 2709 | TUCP | 0.41 | 7 | 27899491 | 27910890 |
XM_034307730.1 | False | 2702 | mRNA | 0.41 | 7 | 27899482 | 27910846 |
XM_034307731.1 | False | 2675 | mRNA | 0.41 | 7 | 27899482 | 27910847 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
znf395a | LOC108270040 | coding | downstream | 7172 | 27882999 ~ 27892310 (-) |
kif13ba | kif13b,LOC107583481,LOC107755780 | coding | downstream | 57286 | 27794420 ~ 27842196 (-) |
ston2 | ston2 | coding | downstream | 341488 | 27528863 ~ 27557994 (-) |
dio2 | dio2,LOC107588276,LOC107751736,LOC107680786 | coding | downstream | 410369 | 27482881 ~ 27489113 (-) |
alkbh1 | alkbh1 | coding | downstream | 895520 | 26998431 ~ 27003962 (-) |
tfb1m | tfb1m | coding | upstream | 146672 | 28057562 ~ 28087407 (-) |
LOC113533853 | LOC108269710,LOC108269711,LOC108269709,LOC108269705 | coding | upstream | 184907 | 28095797 ~ 28106204 (-) |
LOC117598250 | LOC108269710,LOC108269711,LOC108269709 | coding | upstream | 190991 | 28101881 ~ 28105767 (-) |
LOC113533857 | LOC108269710 | coding | upstream | 197204 | 28108094 ~ 28115465 (-) |
LOC113533755 | gpr135,LOC107564991 | coding | upstream | 300730 | 28211620 ~ 28215567 (-) |
G172784 | NA | non-coding | downstream | 64642 | 27833532 ~ 27834840 (-) |
G172782 | NA | non-coding | downstream | 111754 | 27787322 ~ 27787728 (-) |
LOC117598276 | NA | non-coding | downstream | 131381 | 27764605 ~ 27768101 (-) |
G172635 | nrxn3 | non-coding | downstream | 407678 | 27465872 ~ 27491804 (-) |
G172225 | NA | non-coding | downstream | 847448 | 26978466 ~ 27052034 (-) |
G172925 | NA | non-coding | upstream | 23091 | 27933981 ~ 27936828 (-) |
G172903 | scaf8 | non-coding | upstream | 50079 | 27960969 ~ 28044248 (-) |
G172965 | NA | non-coding | upstream | 108338 | 28019228 ~ 28063603 (-) |
G172996 | NA | non-coding | upstream | 219283 | 28130173 ~ 28135542 (-) |
G173012 | LOC108269703 | non-coding | upstream | 244409 | 28155299 ~ 28158417 (-) |
efcab11 | efcab11 | other | downstream | 173725 | 27671623 ~ 27725757 (-) |
foxn3 | foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 | other | downstream | 247181 | 27565258 ~ 27652301 (-) |
G171734 | NA | other | downstream | 2316955 | 25578939 ~ 25582527 (-) |
G171569 | NA | other | downstream | 2640120 | 25258839 ~ 25259362 (-) |
G171256 | NA | other | downstream | 2973258 | 24781282 ~ 24926224 (-) |
G172919 | NA | other | upstream | 1347 | 27912237 ~ 27912544 (-) |
ralgapa1 | ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 | other | upstream | 887259 | 28798149 ~ 28860011 (-) |
G173287 | NA | other | upstream | 926002 | 28836892 ~ 29050026 (-) |
stmn4l | stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 | other | upstream | 990014 | 28900904 ~ 28908552 (-) |
G173434 | kif26b,LOC107589674 | other | upstream | 1325029 | 29235919 ~ 29239270 (-) |