G173012 (LOC108269703)


Basic Information

Item Value
gene id G173012
gene name LOC108269703
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28155299 ~ 28158417 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU204777
CGGAGTCATCTCTTCTGATTTTGGCCTGAGCGTCATCTCTACGATATAGAGAAAATAACATTCAAAACAATATGTTCTTTACAGAAGATGTAATGCTGGAAACCTAAAAATTCATCTGAAGCCAAACAGTTAAGGTTAAACATGTCAGGCTGTGACTTCGAGGATTGAGAGGCTGCTGTATTCTTAATTCAGTGATGTAATTTGTTATAACCTGCTCACAGCCTGCCACAAAAATAAATCGAGTTACATAACAGCAGCTGCAGCCTCCATTGAATTCAGTGACCTTCTGAACTcctgtgaagttttttttttcagtccagtctcacacaaacactcagtCCATGTGCACTTCATCTGTGCTGAATAATACATAGAGCAGGTTTAAACACTCAAAACCATTGTACATACACACCAAGAAACAGACCCTCAATAAGTCTGTGCTTCCTTTTTCCTGAAACTAGGACTGGATCAGCGTGAAACAtccacaggaaaataatcatctgttTGCAGCGTTCCGTTTTCAAACAGGACGACATTAAACCAAAAGCAAAAGAAGATGTTTCTATCCTTCGGTCATTTATCATGATAATATAGAAACACCACTTCCTCTGCTTTTCACTTCTTTAAGAAGTAGGCCGCTCTGTTCTTATCATATTTTAATCCCCGAGCTGTAACTTGTCCttgtgcagatgtacaggtgtataataaatataggacgtaactgcagtgtacttcagtaCTGATAGTGGCTGTAGCAGAAGTTCCAGAGAAGCAGGAAGTTTCAGACAAATGTCCTTCATCTGCtgtgcttctgaggctgtaggaggtgaaaccaTGTAGTAGtggttcttgtttttgttgGGATGAAAGTAGGAACCTCTTAGGAATGATGTTGTTTCTCAGATGttttctaataaatatttttgctaGTTTGATGACAGAATTGAAGTTCTACAATCATTGAACCAGGAACCACAATTTCACTTCCTACAACCACTTTGCTTGcctcctgtttctctggaaactttgtgttaCTTTCTGCTATATCTATTTATATTCCCACATAGCTGAAATTCTGTAGCCATCAGCATCCTTTGTCTCTCTAAGTGTTTACCTCTCCAACTACCTCAGTAATGGAGTACCTATCCTGAGGATGTATAGTTGCTGTGCTCTAAAATCTGCTCCTCCTGCACAGCCTCCTACTCCTGTGATCCTGAGAGCCACAAGTTGCTGCTTCTGCCATCCTGAAGCCTACGAACTTCTTTTTCCAGCAACCTGAGGCCTACAAGCTCCACCTCCTACCATCATAAGGACCATAACCTCCTTCTTCTGCTACCATTAGGACCATAAGCTCCTTCTACAGCCAATCTGAGTACCACAAGCTCTTTCTGTAGCCAATCCGAAGACCACAAGCTCCTTTTACAGCCATCACAAGGACCACAAGCTCCTTCTACAGCCAGTCTGAGCACCACAAGCGTCTTCTACAGCATCACAAGGACCACCAATCTGTGGACTACAAGCTTCTTCTTCAGCCATCACAAGGACCACAAGCTACTTctacagccaatcagaggacTACAAACCTCTTCTACAGCCAGTCTGAGGACCACAAGCTCCTTCTACAGCCAGTCTGAGGACCACAAGCTTCTTCTACAGCCATCATTAGGACCACAAGCTACTTctacagccaatcagaggacAACAAACTTCTTCTACAGCCAGTCTGAGGACCACAAGCTCCTTCTACAGTCAATCTGAGGACCACAAACTCATACAGCTAGTTTGAGGACCACAAGCTCCTTCTACAGCCAGTCTGAGGACCACAAGCTCATACAGCCAATCTGAGGAGTTCACTAGTTCCTACTTTATTATCCAGAAGCACACAAGCTCCTACTCCAGCCATCCTACAAGCTAGTATTTCTGtatgtgctgttttatttaatagaCAGTTAATAAACATATAGTAAGTACCTCAGATGAGTGCAGGAACATCTTCATGATTGTCAAATAAGTCCTGTTGCCACACCTTTTTCCTTCAGGTGttaaaaattctgttttatttctgaattgccgttcaaaacacagaaataggcaaaaaaaaaaaaaaaaaaaattgactgttTCTCCGACTACCACAGCTGTAAACTCACAGGTGGGATGGTCTCTGGGGTCAAGGGTCACCTCACGGTTCACTACGATGTCTAGGTCTGAGACCTTCCACGGTCCCGTAGGCTTCCTCACTCTATCGTCGTCTGAGGTGGTGCACACACACCGATCCAACCAAAAAAACCcacgtacacacatacacacacacacacacatcgacgATGGACAGGGGAAACAAATACAGGGAGTGGAGGAGGAAAGACATGACAAGatacaaaagaaaatgtgtgttagacagaaaaaaatagtaaaaaaggATGAATTCAAGCATGAAATCGGTGTGAGTAAAGTGTAAAGATGATTGTGGATGACAGGATGGAGTGGAATTTTCTGTCCCAACTTTCAAATAGGGGCAAGATAAAAGGTGAGTGTTACTGAAGTGTTCCATTAGAAAATTAtggaataaatgaaaagaatagAAATTTGGAACTGACTAAGGCATCCATGGATCTGATATTAAATATCAGTCAATATCATGATTAAATTCCCAATCTGACCAAGAACCCTTAACGTCTGTGATAGTTCAGAAAAGTTCTGAAAGATGTGTGCGGATCGTCATCATAGCAACCGTCAGGATGTCAGTATCGAAGCATTGAAACACAGAGACTCACCTGATCTGGATCGAGTGTGGCTGATTTGAGCAGGAAGTGGGTGTGGTTTAAGTGTGTCAGGGGTCAAAGGGTAGCCTCCGTCCTGCCTCCCGGTCACCGTGGGAACTTGGATGTAGGGAAACACGGCTGCGACACGACCAGAGGTGATGGGAACAGACTGAGGGGATGAAGGAGTGCTCATCCGCCCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204777 True 2967 lncRNA 0.43 2 28155299 28158417

Neighbor

gene id symbol gene type direction distance location
LOC113533857 LOC108269710 coding downstream 39834 28108094 ~ 28115465 (-)
LOC113533853 LOC108269710,LOC108269711,LOC108269709,LOC108269705 coding downstream 49095 28095797 ~ 28106204 (-)
LOC117598250 LOC108269710,LOC108269711,LOC108269709 coding downstream 49532 28101881 ~ 28105767 (-)
tfb1m tfb1m coding downstream 67892 28057562 ~ 28087407 (-)
znf395a LOC108270040 coding downstream 262989 27882999 ~ 27892310 (-)
LOC113533755 gpr135,LOC107564991 coding upstream 53203 28211620 ~ 28215567 (-)
ccdc175 LOC108269708 coding upstream 67232 28225649 ~ 28239592 (-)
lrfn5a lrfn5,LOC108269707,LOC108443922,LOC107572671 coding upstream 323083 28481500 ~ 28523596 (-)
pnn pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 coding upstream 522282 28680699 ~ 28686251 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding upstream 528758 28687175 ~ 28691402 (-)
G172996 NA non-coding downstream 19757 28130173 ~ 28135542 (-)
G172965 NA non-coding downstream 91696 28019228 ~ 28063603 (-)
G172903 scaf8 non-coding downstream 111051 27960969 ~ 28044248 (-)
G172925 NA non-coding downstream 218471 27933981 ~ 27936828 (-)
G172784 NA non-coding downstream 320459 27833532 ~ 27834840 (-)
G173020 NA non-coding upstream 11857 28170274 ~ 28170878 (-)
G173025 NA non-coding upstream 22780 28181197 ~ 28223887 (-)
G173067 NA non-coding upstream 186022 28344439 ~ 28344767 (-)
G173110 NA non-coding upstream 398662 28557079 ~ 28557281 (-)
G173240 NA non-coding upstream 509396 28667813 ~ 28668220 (-)
G172919 NA other downstream 242755 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 244409 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 429542 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 502998 27565258 ~ 27652301 (-)
G171734 NA other downstream 2572772 25578939 ~ 25582527 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 639732 28798149 ~ 28860011 (-)
G173287 NA other upstream 678475 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 742487 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 1077502 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 1087552 29245969 ~ 29329076 (-)

Expression


Co-expression Network