G173025


Basic Information

Item Value
gene id G173025
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28181197 ~ 28223887 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU204797
gagagagagagagagagagagagagagagagagagagagagtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtctgatGGAGCAGCTCAAATCCTTCCCTGCTCTAAGTGTGTAAACTCCACAGCAttgtcccaatccacactgcACCCTCAATCCACCCTAAATCCTTATGTCCGATAAGGTGTAGTGAACAAATCTAGTGCACTTCCACCAAGTTCCCTTCCTTCACACAAGTCTCATAATCCACAGGGATTTGACACAAATCGTGTctcttctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204797 True 343 lncRNA 0.48 2 28181197 28223887

Neighbor

gene id symbol gene type direction distance location
LOC113533857 LOC108269710 coding downstream 65732 28108094 ~ 28115465 (-)
LOC113533853 LOC108269710,LOC108269711,LOC108269709,LOC108269705 coding downstream 74993 28095797 ~ 28106204 (-)
LOC117598250 LOC108269710,LOC108269711,LOC108269709 coding downstream 75430 28101881 ~ 28105767 (-)
tfb1m tfb1m coding downstream 93790 28057562 ~ 28087407 (-)
znf395a LOC108270040 coding downstream 288887 27882999 ~ 27892310 (-)
ccdc175 LOC108269708 coding upstream 1762 28225649 ~ 28239592 (-)
lrfn5a lrfn5,LOC108269707,LOC108443922,LOC107572671 coding upstream 257613 28481500 ~ 28523596 (-)
pnn pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 coding upstream 456812 28680699 ~ 28686251 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding upstream 463288 28687175 ~ 28691402 (-)
LOC113534010 fbxo33 coding upstream 498772 28722659 ~ 28729487 (-)
G173020 NA non-coding downstream 10319 28170274 ~ 28170878 (-)
G173012 LOC108269703 non-coding downstream 22780 28155299 ~ 28158417 (-)
G172996 NA non-coding downstream 45655 28130173 ~ 28135542 (-)
G172965 NA non-coding downstream 117594 28019228 ~ 28063603 (-)
G172903 scaf8 non-coding downstream 136949 27960969 ~ 28044248 (-)
G173067 NA non-coding upstream 120552 28344439 ~ 28344767 (-)
G173110 NA non-coding upstream 333192 28557079 ~ 28557281 (-)
G173240 NA non-coding upstream 443926 28667813 ~ 28668220 (-)
G173255 NA non-coding upstream 491635 28715522 ~ 28716671 (-)
G173274 NA non-coding upstream 533891 28757778 ~ 28758906 (-)
G172919 NA other downstream 268653 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 270307 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 455440 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 528896 27565258 ~ 27652301 (-)
G171734 NA other downstream 2598670 25578939 ~ 25582527 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 574262 28798149 ~ 28860011 (-)
G173287 NA other upstream 613005 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 677017 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 1012032 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 1022082 29245969 ~ 29329076 (-)

Expression


Co-expression Network