G173106


Basic Information

Item Value
gene id G173106
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28531459 ~ 28531691 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU204884
CTACTAGCGCTTAtcagttagctaacatgatttctgagaggaattttaaaTCTTATTCGTAATTTTTACAATCTTCACCGCTAATGTGATCTCTACTAGCGCTAAtcagttagctaacatgatttctgagaggaattttaaaCCTTATTCGTAATATTTACAATCTTCACCGCTAATGTGATCTCTACTAGCGCTTAtcagttagctaacatgatttctgagaggaattttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204884 True 233 lncRNA 0.33 1 28531459 28531691

Neighbor

gene id symbol gene type direction distance location
LOC117598320 NA coding upstream 54214 28441002 ~ 28477245 (+)
jkamp jkamp,LOC107693092,LOC107564966,LOC107751812 coding upstream 305805 28217692 ~ 28225654 (+)
daam1a daam1,daam1a,LOC108269704,LOC107725326,LOC107751774,LOC107693144,LOC107679992 coding upstream 322597 28181100 ~ 28208862 (+)
sdsl sdsl,LOC108413229 coding upstream 360896 28166153 ~ 28170563 (+)
ppp1r13ba LOC108269703 coding upstream 365805 28128719 ~ 28165654 (+)
ctage5 ctage5 coding downstream 163287 28694978 ~ 28716687 (+)
fam177a1 fam177a1 coding downstream 198738 28730429 ~ 28735890 (+)
prorp kiaa0391 coding downstream 210361 28742052 ~ 28759394 (+)
psma6a psma6,psma6a,LOC107729267,LOC107586679,LOC103457804,LOC107725920 coding downstream 228174 28759865 ~ 28764015 (+)
LOC113533718 insm2 coding downstream 261148 28792839 ~ 28796775 (+)
LOC117598375 NA non-coding upstream 96061 28389196 ~ 28435398 (+)
LOC113534053 NA non-coding upstream 286733 28236673 ~ 28244726 (+)
G172873 NA non-coding upstream 339547 28148577 ~ 28191912 (+)
G172830 NA non-coding upstream 408627 28119062 ~ 28122832 (+)
G172858 NA non-coding upstream 422794 28101507 ~ 28108665 (+)
G173140 nfkbia non-coding downstream 238334 28770025 ~ 28772065 (+)
G173143 NA non-coding downstream 266476 28798167 ~ 28807149 (+)
G173154 ralgapa1,LOC108414275,LOC107729238,LOC107589631,LOC107586611 non-coding downstream 288809 28820500 ~ 28825365 (+)
G173156 NA non-coding downstream 300655 28832346 ~ 28864098 (+)
G173198 NA non-coding downstream 382401 28914092 ~ 28973429 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other upstream 460378 28028000 ~ 28071081 (+)
trnak-uuu_7 NA other upstream 806180 27725207 ~ 27725279 (+)
nrxn3a nrxn3,LOC107583487 other upstream 1063893 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 3100530 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 3213182 25258811 ~ 25318277 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 329771 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 522542 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 538029 29069720 ~ 29073089 (+)
nrde2 NA other downstream 561773 29093464 ~ 29138776 (+)

Expression


Co-expression Network