G173140 (nfkbia)


Basic Information

Item Value
gene id G173140
gene name nfkbia
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28770025 ~ 28772065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU204932
AGGATGAAGCTCACCGCTGTAGTTGGGCATCTGCAGGATGGACGGCAGATACTCCAAGCCGCTTTGCGTGAGGAGACCGAAACACGTGAGCGATCCCGTCCTGCAGGCGATGTGCAGAGCCGTGTTGCCGTTGTTGTCCACCAGCATGGGGTCGCAGCCGGCTTTCAGCAGACGCTCCACCACCAGAGGCTGCTCTGTGATCACAGCCAAGTGCAGCGCCGTCTGCGGAAAGATCCGGATCTTAACGCATTTCCTTCAattttagcacaaaaaaaaaacagctgagcCTGTTTAGAGTGTTGTACCTGTCTCTGGTAGTTCTGTTTGTTCAGGAACGGGTGCCTGACGGACATTTCGATCATTTTCAGTGCCATGTCTTGGGCCTCATGAATGATAGCCAGATGCAAATAcctgtgagaaagaaaaaaggaacaatTAGTGACGGTAAAAATGGAATTTAATGTTAAACGCTCGCTGTGCTGCACACGGCTCACTGGGGAAAAACAagcagtgacttttttttctctctgcaggcAGTGGTGTTTTTCCTAGAAGGGCCTTACTGGCAGACAGCCCGGgactttccacacacacacacttatgcaagcgcgcgcacacacacacacacacacacacacacgcactgagCCAAAGTACAAAACACTGTATAGTGAACAATCCTTCCTGCAGAGCAAGAACTAAACCTAAACAcataacatgcatttatttcatATCTATTACATGATATTTGCTTTCTGTATTATTAACAGCTTCAGCCTGCTAATTACTGCAATCAgcacaaataaacagattaaacactgCTGCACACCAAAAACAAACCCTCTGCACTGCATTAACACTTAGTGTGCACTCAGACATGCTGAATGAACAACTACACTCTGTATTTAACCCTTAAATTTAACCCTTCCAGTATTTAACACTTACACTTTCTTCTTAACACTTACACTGTATTTAACACTTACACTCTGTACTTAACACTTACACTGTATTTAACACTTACACTCTGTACTTAACACTTACACTGTATTTAACACTTACACTCTGTACTTAACACTTACAGTATTTAACACTTAACACATGCTGTATTTAACCCTTAACACATGCAATATTTAACACGTAACACATGCAGTATTTAACCCTTACACTCTTTGCCCTGACCGACCTGCATGTTTTCTTTAGGTGTTTAATTCAATACTAAGGATTTAGTTCcactctaactgcacattttgTGTTCATCTGTTGTGTCTGAACACACTGGAGTGTTTATTCACTGACATGctctttattaaacattaaatactgaaataaagcCTAGTGTTGAATCCGTGACTGTGTTTTTTCTCGGATTGGATTTAAGGTGCAGCTTTTCTGAGCGCGAGATTACACTCCTGGCTGCACACATGCAGTGTTTCATTAGCGCTTAAAGGTTTTAAATGAACACTTCTGACGCTGAATAAACTCCTACACTCACGCAAACACCGCGTGTAGGTGTAAACTCCACGCTTTCACGCGCTCTAATCAACACCGTGAGCTTTAATTCCACACCTGAGGTGTTTATTCCGCTGTGCGCGCGCACGGTGTCGGTGTAGCGTTAATCCCTGAGCAGCACACACTCTGACCGGGTGTTAAAGtgcacaaaaaatattaaatgtataagtAAAGGGTCACCACGCACGTGTCTCCGTCTTCCGTGATCTCGGTCCTCCAGCGCTCCTCGTGCGCTCCGTCTACACTCAGCCTCGCGAACTCGGCGGTCACGGGCCCCTCGCGCGCGCTGCAGTAATCCTCCGTGTCGTCCTCGCGCAGGGAGTCCAGCCCGCTGTCCAGGCGCTCGTCTATCACCGTCCCCGCTTTGTGCGCGCGCCCTTCCGAACCGTAATCCATCGGGCTCGTGCTGGTGATGTTCCGATAAAGAGCCGTGttaatagagtgtgtgtgagagagagtgtgtgtgtatgtgtgtgtgtatgtgtgaagtgaagtgtgagCTGATCTGA

Function

symbol description
nfkbia Enables several functions, including NF-kappaB binding activity; nuclear localization sequence binding activity; and ubiquitin protein ligase binding activity. Involved in several processes, including negative regulation of macrophage derived foam cell differentiation; positive regulation of cholesterol efflux; and regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of NF-kappaB transcription factor activity. Located in cytosol; nucleus; and plasma membrane. Implicated in several diseases, including childhood-onset asthma; hematologic cancer (multiple); hepatitis B; hepatitis C; and lung disease (multiple). Biomarker of nephrotic syndrome; prostate adenocarcinoma; prostate cancer; and pulmonary tuberculosis.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204932 True 2018 lncRNA 0.46 2 28770025 28772065

Neighbor

gene id symbol gene type direction distance location
psma6a psma6,psma6a,LOC107729267,LOC107586679,LOC103457804,LOC107725920 coding upstream 6010 28759865 ~ 28764015 (+)
prorp kiaa0391 coding upstream 10631 28742052 ~ 28759394 (+)
fam177a1 fam177a1 coding upstream 34135 28730429 ~ 28735890 (+)
ctage5 ctage5 coding upstream 53338 28694978 ~ 28716687 (+)
LOC117598320 NA coding upstream 292780 28441002 ~ 28477245 (+)
LOC113533718 insm2 coding downstream 20774 28792839 ~ 28796775 (+)
il17a/f1 LOC108269793 coding downstream 123827 28895892 ~ 28898603 (+)
emilin1b emilin1,LOC107693157,LOC107729260 coding downstream 196066 28968131 ~ 28983869 (+)
ankef1b LOC108269963 coding downstream 224959 28997024 ~ 29006766 (+)
snap25b snap25b,LOC103032718,LOC108415625,LOC108270282,LOC107693159,LOC107589629,LOC107586606 coding downstream 236455 29008520 ~ 29026238 (+)
G173106 NA non-coding upstream 238334 28531459 ~ 28531691 (+)
LOC117598375 NA non-coding upstream 334627 28389196 ~ 28435398 (+)
LOC113534053 NA non-coding upstream 525299 28236673 ~ 28244726 (+)
G172873 NA non-coding upstream 578113 28148577 ~ 28191912 (+)
G172830 NA non-coding upstream 647193 28119062 ~ 28122832 (+)
G173143 NA non-coding downstream 26102 28798167 ~ 28807149 (+)
G173154 ralgapa1,LOC108414275,LOC107729238,LOC107589631,LOC107586611 non-coding downstream 48435 28820500 ~ 28825365 (+)
G173156 NA non-coding downstream 60281 28832346 ~ 28864098 (+)
G173198 NA non-coding downstream 142027 28914092 ~ 28973429 (+)
G173200 NA non-coding downstream 148938 28921003 ~ 28921399 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other upstream 698944 28028000 ~ 28071081 (+)
trnak-uuu_7 NA other upstream 1044746 27725207 ~ 27725279 (+)
nrxn3a nrxn3,LOC107583487 other upstream 1302459 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 3339096 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 3451748 25258811 ~ 25318277 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 89397 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 282168 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 297655 29069720 ~ 29073089 (+)
nrde2 NA other downstream 321399 29093464 ~ 29138776 (+)

Expression


Co-expression Network