kif28 (kif28p,LOC108270380)


Basic Information

Item Value
gene id kif28
gene name kif28p,LOC108270380
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29054233 ~ 29138878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205043
GATTAAATCAGGTTTTTATTAACCGCTTTACAGTCTGaactttttaatccattagtGCAAAAGTTACAAGgggaagaacacacacacacacacactaacatttaaATTCCCCACAGTCCAAACAGgaaaagtgtgagagagaactGCTCAGAAGaaaagctaacacacacacacacacaggtcaacAAATGCTAAGTGTGTAGGCTAAATCAGGCTAAATATTGCTCACGTACACTGCGTTTGTGTTTGTTAGGTTGCACATCACCTCCTCTTTAGTGTGAGAGTAATGGACTACATCAGAAGGTGTTGCATTATACTAATTTCAGAATGAAGTAAATGACTTTCACCCTGTGTGTAAGCGTTAATGCTAAGTGCTAATCAGAGCGAGTAGCGTATGACAGGAAGTGCTGAAACCGTGCTGCGCGATACTCCGCTCCGCTCACAGCACTGAGAAACGAATGCCGTGTTTATCCAGCCGCTCGATCAGGGAGGTTTTAGCGAAAGCAGCTCCGGGGGTGTACACACCACCTCTGNNcacacacacacacacacagag
>XM_034308248.1
ATGTAtgtgtgtattatcaTCGCCAGCACCTTCACCTTCCACTTCACCTTCTGGTCTCACAGCGGCTTCAGCAAGAACACTGACGGACTGCTAGTGCCTGAGGAGGAGGGGGGACGCTACGCTGACcagGCGTGTGTGTTTGCCGGAGTGGGGCAGGGGATTCTGGGTAACGCTCTGCAGGGCTACAACGCCACGCTGCTGGCGTACGGTCAGACGGGTTCGGGGAAAAGTTACTCCATGATGGGCTTCGGAGCCAACAAGGGCCTCGTCCCAAATCTGTGTCACTCACTTTTCACCTACATCACAGTCAGTCAGGACCGATGCCAGTGCCAGGTTTTCTTCAGCATGTTAGAAATCTATAATGAACAGGTGATCGATCTGCTGTCCAGGTCGAGTCGTTCGGGCGGTGGTCTGCGTGTGCGTGAGGATCAGCAGCGTGGTTTTTACGTGGAGGGTCTGCGCAGGGTGGCGTGTGACGGCGCTGTGCAGGTGGAGCAGCTGATGGAGCAGGGAACTCGCACACGCACCACCGCCGCCACTCACCTGAACGCCAACAGCAGCCGCTCACACATGCTCATCATCATACAGCTCAAACAGATTTTCTCAAAGGAGTGCATCACTAAACAGTCCAACATTAACCTGGTTGACCTGGCAGGAAGTGAAAGGCAAAGGTCATCAGGGTCAGAGGTCGATCGTCTTAAAGAGGGAACAGCCATTAATCTCAGTCTCACCACTCTGGGGAACGTGATCAGTGCCCTGGCAGAAGTGGCGCTGGGGAAGAAAGCGGTGTATATCCCCTACAGAGACTCCGTCCTCACTAAACTGCTGCAGTCTGCGCTGGGAGGAAACAGCCGCACCGTCATGATCGCGACTCTCAGTCCAGCGGATATCTGCTACGAGGAGTCACTGTCCACTCTGCGCTACGCCGAGCGAGCCAAGCGGATCCAGAACAAGGCTGTGGTGAACGAGGGCCCAACGGAGCGACTGGTTAAAGAACTGAAAGCTGAGAATGCTAAACTGTTGCTGAAGCTCAGTAAACTGGACCAGAACGGGAGACGGTCCGAGCAGGAGATGAAAGATCTGCGGCGTTTGCTGACTCACAATGAGCTACAGATCCGAGCGATTCAGACTCTGTGGGAGCAGCACCTTCAGGAGGCTCTGAAAGACTGGGAGACCCAGTACACCACCATCACACagGAGCGAAGGATGATGCAGATGTTTCCCTACATGCTGAACATTAATGAAGATGCGCAGCTCTCTGGAGTCATCAAGCTCTTCATTCAGGAGGGTGAGTGGGATGTGGGTTTAGCAGACGCGTCACCCAGATCCATCTCCATCAGAGGACTGGGtaTTCAGGAGCGACATGCCATCTTCTCCAATCAGCAGCGTCGAGTGACAGTCACGCCATTGtcggggtcaaaggtcacagtTAATGGCGTGTCCATATCTCAGACCACAGAGCTGCAGCATTTGgacCGTGTGATCCTGGGCTCCAACAGCACCTTCCTGTTCATCGGTTTTCCGTCGGAGCGGGTCGGAGACGATTGGAGTcgttatgattatgattattttcaGTCTGAACTGGCGGCGGCGGAGGGAGTTCACCTGCACACGCTGTGTCACACACCTGGACAGAGGTCCCTGCAGCCCAACCCCAGCCTCCTAGCTGCCTTTTACGACTACATCAAACTGATGCCGATGCTGACGGAGGCGAACCAGATGAGTCAGGAACTGAACAAGGGGGTGGAGTTTAAGATGGAGATTAAGAACCTGGCGATGTCCGACTCTAAAGGTCACGACCTGGAGAAGGAGATTGTGGTCAGAGTGACGAACGTGCAGAGCAAACAGGTGTGGCTGTGGTCCAAAGCGAAGTTCATTAACCGTAAGTTCCTGATGGAGGAGGTGTACCAGCGGGGGGCGTCGCTGCCCGCCCTGCCCCAGGATAAAGACCCCTTCTGGGACCCGGTGGAGCCTCTACACCTGGGCAGTGCTCACCTGTGGCTGCACTCGCTGGCCTTCCGCATTCCCGTGGATGAGCAGGTGGAGGTGATGGGACCTGAGGGCACTGAGGAGGCCATGCTGCACGCACGCCTGGTGCCCTGCAGCCCcgagggattgccccTGGGAGAGGAGGATATCCTGATTGACCCCACAGAGCTGCTTGGAAAGCGGCTGGATTTCCAGCTGATCCTGGATCAGTGCTGCGGACTGCGCTGGGTCAAAGAGGCCCGAACCCGCGGCGTCCAGATCGGgttccAGATGTTTGACTGCACAGAGCCGCTGTACACTCAGGCGGCGTGGCGGTGTGTGAACCCACAGCTGGATTACTGCGTTCAGTTCACAGCCCTGAACAcgtcacacacactgctcacctACCTGCAGAGTAACGCTGTGGTCCTGCAGCTGTGGGGTCTacaggAGGGATGTTCTGCCATGACGTCACGTCTGCACAGTGTGAGGAAAACTCCAGAAAACAGCATCTTCATCGACACAGCCGAGGACTCGGAGCACACGagtgtggaTAGCTCAGTGTCGGATCCGAGTGTGTGTCTGCGAGTTCTACATGAGGATCTGGAGCAGCTGAAGAACACCAACGCAGCACTGAGGAAAGAGAATGACACACTGAGAGAacagctcaacacacacacacgacacgGTGTGGAGTGCGCTCGAGGCCGCTCAGGAAGTCTGAAGTCCAGCTGTGATGCTGAATTCGCTCGAGCGCTGAAGGTGTTTTATCACAGCATGACGTCGGTTAGAGCTCAGCTGCAGCGACTGCGCAGACACAGACCCAGTgaggaGGCGGACCTGCAGGGTCTGAGATTCTTCGtggatgaacacacacacctgctgaaaGAGTTCAGTGAGCAgctggagcagtgtgtgtgtgcgctgaagCAGGACGTGGCAGCCATCGTTcgcaggaagagagagaaatcagcGATCTGGTCGtaacgagcacacacacactcgacagGTGAGTTCACATTCACTGCgtatcacacacacctgctcaccGTGTTCCTCACCTGAGCCTCGCTATTCAGCTGTTCATTcaccaacacagagagacaggagtgtAGGACACTAGGTGGGAAGAATGATCCAGGGGCGGAGCCAAGGCAAGCATGGACCAATCAGTGTCTCTGATTAGCTGTGTGAGAATCCCTAcagctctcagccaatcagaacacactttaCTTAATCTCTATACACACTGGACTGCTAAATAATAAACCTGCAACTCCACGTGTAAATGTGCGCTCAATACAAGACAgaaaagttaaaataatattttagacGGAAAAGTGATTAAATCAGGTTTTTATTAACCGCTTTACAGTCTGaactttttaatccattagtGCAAAAGTTACAAGgggaagaacacacacacacacacactaacatttaaATTCCCCACAGTCCAAACAGgaaaagtgtgagagagaactGCTCAGAAGaaaagctaacacacacacacacacaggtcaacAAATGCTAAGTGTGTAGGCTAAATCAGGCTAAATATTGCTCACGTACACTGCGTTTGTGTTTGTTAGGTTGCACATCACCTCCTCTTTAGTGTGAGAGTAATGGACTACATCAGAAGGTGTTGCATTATACTAATTTCAGAATGAAGTAAATGACTTTCACCCTGTGTGTAAGCGTTAATGCTAAGTGCTAATCAGAGCGAGTAGCGTATGACAGGAAGTGCTGAAACCGTGCTGCGCGATACTCCGCTCCGCTCACAGCACTGAGAAACGAATGCCGTGTTTATCCAGCCGCTCGATCAGGGAGGTTTT

Function

symbol description
kif28p Predicted to enable microtubule binding activity and microtubule motor activity. Predicted to be involved in mitochondrion organization and organelle transport along microtubule. Predicted to be located in mitochondrial membrane. Predicted to be part of kinesin complex. Predicted to be active in microtubule.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205043 False 556 lncRNA 0.44 2 29066842 29138878
XM_034308248.1 True 3806 mRNA 0.53 23 29054233 29067337

Neighbor

gene id symbol gene type direction distance location
ahctf1 ahctf1,LOC106512612 coding upstream 2794 29028670 ~ 29051439 (+)
snap25b snap25b,LOC103032718,LOC108415625,LOC108270282,LOC107693159,LOC107589629,LOC107586606 coding upstream 27995 29008520 ~ 29026238 (+)
ankef1b LOC108269963 coding upstream 47467 28997024 ~ 29006766 (+)
emilin1b emilin1,LOC107693157,LOC107729260 coding upstream 70364 28968131 ~ 28983869 (+)
il17a/f1 LOC108269793 coding upstream 155630 28895892 ~ 28898603 (+)
LOC117598241 NA coding downstream 11759 29150637 ~ 29157548 (+)
kif26ba kif26b,LOC107589674 coding downstream 36793 29175671 ~ 29243356 (+)
tfb2m tfb2m coding downstream 193378 29332256 ~ 29344637 (+)
LOC117598322 cnst coding downstream 207576 29346454 ~ 29359619 (+)
LOC113525415 NA coding downstream 221131 29360009 ~ 29368790 (+)
LOC117598233 NA non-coding upstream 23 29053136 ~ 29054210 (+)
G173209 NA non-coding upstream 60763 28990797 ~ 28993470 (+)
G173208 NA non-coding upstream 64527 28989119 ~ 28989706 (+)
G173198 NA non-coding upstream 80804 28914092 ~ 28973429 (+)
G173201 NA non-coding upstream 131147 28921469 ~ 28923086 (+)
G173237 NA non-coding downstream 30996 29169874 ~ 29170599 (+)
G173371 NA non-coding downstream 82175 29221053 ~ 29221649 (+)
G173373 NA non-coding downstream 105195 29244073 ~ 29244961 (+)
G173374 NA non-coding downstream 106465 29245343 ~ 29245565 (+)
G173386 NA non-coding downstream 137084 29275962 ~ 29304413 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other upstream 118533 28861462 ~ 28935700 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other upstream 983152 28028000 ~ 28071081 (+)
trnak-uuu_7 NA other upstream 1328954 27725207 ~ 27725279 (+)
nrxn3a nrxn3,LOC107583487 other upstream 1586667 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 3623304 25426891 ~ 25430929 (+)

Expression


Co-expression Network