Gene
RNA
| Item | Value |
|---|---|
| gene id | G173237 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 29169874 ~ 29170599 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU205073 | True | 271 | lncRNA | 0.56 | 2 | 29169874 | 29170599 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598241 | NA | coding | upstream | 12326 | 29150637 ~ 29157548 (+) |
| fam149b1 | fam149b1 | coding | upstream | 55635 | 29104328 ~ 29114239 (+) |
| ttc7b | ttc7b,LOC106601235 | coding | upstream | 82693 | 29075602 ~ 29087181 (+) |
| ahctf1 | ahctf1,LOC106512612 | coding | upstream | 118435 | 29028670 ~ 29051439 (+) |
| snap25b | snap25b,LOC103032718,LOC108415625,LOC108270282,LOC107693159,LOC107589629,LOC107586606 | coding | upstream | 143636 | 29008520 ~ 29026238 (+) |
| kif26ba | kif26b,LOC107589674 | coding | downstream | 5072 | 29175671 ~ 29243356 (+) |
| tfb2m | tfb2m | coding | downstream | 161657 | 29332256 ~ 29344637 (+) |
| LOC117598322 | cnst | coding | downstream | 175855 | 29346454 ~ 29359619 (+) |
| LOC113525415 | NA | coding | downstream | 189410 | 29360009 ~ 29368790 (+) |
| LOC117595705 | sccpdh | coding | downstream | 199333 | 29369932 ~ 29376033 (+) |
| G173228 | LOC108270182 | non-coding | upstream | 50121 | 29117324 ~ 29119753 (+) |
| G173215 | NA | non-coding | upstream | 89740 | 29079237 ~ 29080134 (+) |
| LOC117598233 | NA | non-coding | upstream | 115664 | 29053136 ~ 29054210 (+) |
| G173209 | NA | non-coding | upstream | 176404 | 28990797 ~ 28993470 (+) |
| G173208 | NA | non-coding | upstream | 180168 | 28989119 ~ 28989706 (+) |
| G173371 | NA | non-coding | downstream | 50454 | 29221053 ~ 29221649 (+) |
| G173373 | NA | non-coding | downstream | 73474 | 29244073 ~ 29244961 (+) |
| G173374 | NA | non-coding | downstream | 74744 | 29245343 ~ 29245565 (+) |
| G173386 | NA | non-coding | downstream | 105363 | 29275962 ~ 29304413 (+) |
| G173408 | NA | non-coding | downstream | 183526 | 29354125 ~ 29357731 (+) |
| kif28 | kif28p,LOC108270380 | other | upstream | 30996 | 29054233 ~ 29138878 (+) |
| nrde2 | NA | other | upstream | 31098 | 29093464 ~ 29138776 (+) |
| G173221 | mrpl57 | other | upstream | 96785 | 29069720 ~ 29073089 (+) |
| brms1la | brms1l,brms1la,LOC107682295,LOC107693096 | other | upstream | 234174 | 28861462 ~ 28935700 (+) |
| LOC113533782 | cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 | other | upstream | 1098793 | 28028000 ~ 28071081 (+) |
