G173240


Basic Information

Item Value
gene id G173240
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28667813 ~ 28668220 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205077
GTTCCTGCTCTGTCCGAGTCGATCACATGGATGTTTTCACGCTGCAGTGGTTTGTAATCTGCTGATGATCTGTCTGATTACACGCTGCAGGAACAAACTGACTGACAGCCGAGCAGATCCTCTTCACCTACTGttacactgagagacagaccCAGAgtgatagacagagaaagaaagaaacacaataacagagagatagatggagagaatgagacagagacacagactgagacatggacagagagagagagagagagagagagagagggagaagctgAGACAAAGAGACTAGATGAGGAGATGGCTGGAGCTGTCCACCACTTCAGCATTAAGCTTtaatgtctctttctctctctcacacacacacacacacacacacagcagatggTTAAAAGGCCACAACCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205077 True 408 lncRNA 0.47 1 28667813 28668220

Neighbor

gene id symbol gene type direction distance location
lrfn5a lrfn5,LOC108269707,LOC108443922,LOC107572671 coding downstream 144217 28481500 ~ 28523596 (-)
ccdc175 LOC108269708 coding downstream 428221 28225649 ~ 28239592 (-)
LOC113533755 gpr135,LOC107564991 coding downstream 452246 28211620 ~ 28215567 (-)
LOC113533857 LOC108269710 coding downstream 552348 28108094 ~ 28115465 (-)
LOC117598250 LOC108269710,LOC108269711,LOC108269709 coding downstream 562046 28101881 ~ 28105767 (-)
pnn pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 coding upstream 12479 28680699 ~ 28686251 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding upstream 18955 28687175 ~ 28691402 (-)
LOC113534010 fbxo33 coding upstream 54439 28722659 ~ 28729487 (-)
ppp2r3c ppp2r3c,LOC107682116,LOC107725453,LOC106611177 coding upstream 68098 28736318 ~ 28742071 (-)
nfkbiab nfkbia coding upstream 100255 28768475 ~ 28772162 (-)
G173110 NA non-coding downstream 110532 28557079 ~ 28557281 (-)
G173067 NA non-coding downstream 323046 28344439 ~ 28344767 (-)
G173025 NA non-coding downstream 443926 28181197 ~ 28223887 (-)
G173020 NA non-coding downstream 496935 28170274 ~ 28170878 (-)
G173012 LOC108269703 non-coding downstream 509396 28155299 ~ 28158417 (-)
G173255 NA non-coding upstream 47302 28715522 ~ 28716671 (-)
G173274 NA non-coding upstream 89558 28757778 ~ 28758906 (-)
G173282 NA non-coding upstream 193181 28861401 ~ 28862608 (-)
G173289 NA non-coding upstream 194688 28862908 ~ 28864167 (-)
G173268 NA non-coding upstream 197693 28865913 ~ 28866675 (-)
G172919 NA other downstream 755269 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 756923 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 942056 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 1015512 27565258 ~ 27652301 (-)
G171734 NA other downstream 3085286 25578939 ~ 25582527 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 129929 28798149 ~ 28860011 (-)
G173287 NA other upstream 168672 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 232684 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 567699 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 577749 29245969 ~ 29329076 (-)

Expression


Co-expression Network