G173282


Basic Information

Item Value
gene id G173282
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28861401 ~ 28862608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205145
acacacactatacacacatcacacacactatacacacacatcacagcagCTGATGTTTACACACCGCTAGCTTCTCAGCGCTACAGCTAGCTACCTGCCTGCTTTAAATCTGGCGACGGTCCAGAAACACTCTTCACGCGCACTTACAcggaataaaacattaaaattcgcTCTTAAAGCTGGAActtaaactgaaataaactcTAACTGCCTGAAGTTTATCTCATCGCGCGCTGGATTTGCTGCTAGCTAAACTCCAATGTTTGGCTAAAATTGTTTCACTAGCTTCGAGCCGAGGGGCTGACCGGCGTTCTGGCGCCCACTGGGGGattgtgggaaatgtagtttttaaagaTTGTATTGTTTCTTCCGCTCAGTAGCGTCTTGGCGACa
>TU205147
gtttgtgtagttgttgttgttgttgtgtgtgtagttgtgtagcgTGGGTGTGTTACCGGAGCTCTCTCCGTCCTCGGAGCCGGATGAGGTGTCGGTGTCGTCCTCCTCTGAGCTGCTGCCCTCCTGCTCTCCATAATccacctccatctcctcctgagcgctctccttcttctccttcgaGTGAACCGGCATCTTAGTAACCAATCacctgcacacacacactatacacatcacacacacactacacacactatacacatcacacacacacacacacacacacacacacacacacactatacacatctcacacacacacacac
>TU205149
gtttgtgtagttgttgttgttgttgtgtgtgtagttgtgtagcgTGGGTGTGTTACCGGAGCTCTCTCCGTCCTCGGAGCCGGATGAGGTGTCGGTGTCGTCCTCCTCTGAGCTGCTGCCCTCCTGCTCTCCATAATccacctccatctcctcctgagcgctctccttcttctccttcgaGTGAACCGGCATCTTAGTAACCAATCacctgcacacacacacactccctacacATCTCCTCCTGAGCgctctccttcttctccttcgaGTGAACCGGCATCTTAGTAACCaatcacctgcacacacacacactatacacatcacacacacactacacacactatacacatcacacacacacacacacacacacacacacacacacactatacacatctcacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205145 False 393 lncRNA 0.46 2 28861401 28861869
TU205147 False 323 lncRNA 0.51 2 28862052 28862608
TU205149 True 413 lncRNA 0.51 2 28862052 28862608

Neighbor

gene id symbol gene type direction distance location
nfkbiab nfkbia coding downstream 89239 28768475 ~ 28772162 (-)
ppp2r3c ppp2r3c,LOC107682116,LOC107725453,LOC106611177 coding downstream 119330 28736318 ~ 28742071 (-)
LOC113534010 fbxo33 coding downstream 131914 28722659 ~ 28729487 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding downstream 169999 28687175 ~ 28691402 (-)
pnn pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 coding downstream 175150 28680699 ~ 28686251 (-)
lrrc57 lrrc57,LOC107682003 coding upstream 5063 28867671 ~ 28877881 (-)
il17a/f2 LOC108269798 coding upstream 19644 28882252 ~ 28885109 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding upstream 53768 28916376 ~ 28928895 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding upstream 124751 28987359 ~ 28996157 (-)
mrpl57 mrpl57 coding upstream 210096 29072704 ~ 29075467 (-)
G173274 NA non-coding downstream 102495 28757778 ~ 28758906 (-)
G173255 NA non-coding downstream 144730 28715522 ~ 28716671 (-)
G173240 NA non-coding downstream 193181 28667813 ~ 28668220 (-)
G173110 NA non-coding downstream 304120 28557079 ~ 28557281 (-)
G173067 NA non-coding downstream 516634 28344439 ~ 28344767 (-)
G173289 NA non-coding upstream 300 28862908 ~ 28864167 (-)
G173268 NA non-coding upstream 3305 28865913 ~ 28866675 (-)
G173292 NA non-coding upstream 8862 28871470 ~ 28871955 (-)
G173293 NA non-coding upstream 10835 28873443 ~ 28874318 (-)
G173260 NA non-coding upstream 71352 28933960 ~ 28985241 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 1390 28798149 ~ 28860011 (-)
G172919 NA other downstream 948857 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 950511 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 1135644 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 1209100 27565258 ~ 27652301 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 38296 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 373311 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 383361 29245969 ~ 29329076 (-)

Expression


Co-expression Network