G173287


Basic Information

Item Value
gene id G173287
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28836892 ~ 29050026 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205159
CTCGCTCTCTGAGCCCCAGACGCGCCGTCGCTAACAGGTGAGGTGTCGGGTTCTGGCGCTTTGCTGGCTCTCGTTCTTCTAACAGACGGAGCAGATTTCTTCTTCTGCTCCTGCTGCTCAGTAGAAAGCGCTGACTCCGGAGCTTCAGCGTTCTGCTCTTCATGGTCCACAGCTGGAGCTACAGATCTGGTCCGCCGCTTGGCGCGCACTATCTCCGTTACCACTTCACTCTCTTTAGCTTGGTCATTGTTCAGTCTCTCCATCAAAGCGCTCTCCAGCAGATTGGTGGattccaggttctctggtttctcgAGTTCCTCTCCGTCGTTCCAGTGCCGGCTCCTCGTCAGTCGTCTGGAAACGTTTTGAAGCTGAGCGCTGTCCACTATGTAAGTCTCGTTGTTTGCTTTTTCCTCCGTAGTGCCTCTGGTTTTCCTTCTGCTCCTCGGTGGCGTCACTAAAGACGCGTTCTGAACGTCTGAAACCATCTGGAAGTTCTCCAGCGTTAAGCTCAGCCTCCTGCTCGACTGGCGAGTCACCCTGCCGGGACTAGCGTTAGTGTTAGCTTGGTTTTCCGCAGGTTTCTCCTCAGGGATCGGCTCTGGGACCTCGATTGTTGCCACTTTTCTAGTCTTCCTTGCGCTCTGATGTTCAACAATTGAcgtttcctccattttctggACTTCTTCAACGTCATCGTTTGCACTCGAGCTCCTCGTTTTGCGAGCTCCTCTCCTGGGTGTAGCTTTCTGTGAAGTCTTACGTGGAGGAGTTGCTTTTGTTGAGGGCACCTCCTCCACAATGACTTCAGAATCAGTTTTTCTTGTGCTTCTCCTTGGTGTGATGAGAACTTCAGACTCCAGCAGCTGCTTGCCGCTCCTCGTTACGCGTCTTGGTGTGGAAGGCACTTTCGAATCAGCTCGCTCCTCTTCAGAAGCATCTTTCTCAGGTTCCATCACGGTTACTGGAAATGTAACagtctttcttcctcttcttgctGGGCTTTGTTGTACTTCCTTCAACTCAGCTCTATTAGCTTCAGAAACATGGTCTTCAGCTACAGGAACCAGCTCACTAGATTCTACAACATCTTCAACAGCCATCTTCTCATTATGGACCAAACCATCCTCCTTGACTTCAGTCAAGCCTGAATCCTGAACCTGACCAGTGACACATATATCAGTTACATCAAAAGTCTCTTCAATCACAGGTTCCTTCACAGGTTCCTCCATAGGCTCCTCTGCAGTTTCCACTGGTTTCTCCACAGGCTCCTCTGCTGTTTGAGCTTCAATGGCAGAATCTGGAATTCGCTCCATTTTCTCTTCTGTCTGCTCTGCTTGAGCTTCATCTGCTGATTGATCAGGTTGATCTTCTATAAGTGGTTCAGGTTCTGCCACTGCTTCTGACTTCGACTGTTTCTGAACTTCTTCGGCTGGTTCACCAGGTTGATCTTCCACGTTCGGTTCAGATTCAGTCACTTCCTGCTCCATCTGAACCTCCTCTATTAGGTATACTTTATTAGGTTCCACATCATCTGGCACAACCGTTTCTGAAGGTATCTCCTCCATTCTGAACATTTCCTCAGGCTCGAGGACAGCGTGCTCCACACTAACATCATCCCTGTTAGCATTTGGTTCTTCCTCCATATCTCCAGCGTGCTCTGTGTTCTCTTGCAGAGTTAGATGGTTTTCAGCGTCCATTTCTAAAGCAGCTGGTTCTTCATCATCTGCCTCCAGCATGAGGGAGAAGTTATTGGAGCTGAGAGGAAGTGCGACCTCGGGCAGCTCGGCTCCGTGCAGAAGCTCCTGATGCTCAGCGGCCAGCTCGATAGGAACGAGGAGAGTGGTGGAGGGCTTCAGCTCCGTGTAGCAcacatcaccttcatcatccagGCTCGCAGGTCTCAGGCCAACCACCACCACCTgaccttcctcttcctcacagcCGTCCACCACCTGCTCAGtccacacgcgcacacacacacgcgcacacacacacgcgcacacacacacacacacacacacacacacacacagtctctctctctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205159 True 2056 TUCP 0.51 3 28836892 29050026
Loading

Neighbor

gene id symbol gene type direction distance location
nfkbiab nfkbia coding downstream 64730 28768475 ~ 28772162 (-)
ppp2r3c ppp2r3c,LOC107682116,LOC107725453,LOC106611177 coding downstream 94821 28736318 ~ 28742071 (-)
LOC113534010 fbxo33 coding downstream 107405 28722659 ~ 28729487 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding downstream 145490 28687175 ~ 28691402 (-)
pnn pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 coding downstream 150641 28680699 ~ 28686251 (-)
mrpl57 mrpl57 coding upstream 22678 29072704 ~ 29075467 (-)
calm1a LOC108270185 coding upstream 39146 29089172 ~ 29092223 (-)
ndnfl LOC108270182 coding upstream 68347 29118373 ~ 29130728 (-)
LOC113525666 LOC108261332 coding upstream 87994 29138020 ~ 29146605 (-)
G173274 NA non-coding downstream 77986 28757778 ~ 28758906 (-)
G173255 NA non-coding downstream 120221 28715522 ~ 28716671 (-)
G173240 NA non-coding downstream 168672 28667813 ~ 28668220 (-)
G173110 NA non-coding downstream 279611 28557079 ~ 28557281 (-)
G173067 NA non-coding downstream 492125 28344439 ~ 28344767 (-)
G173338 NA non-coding upstream 20009 29070035 ~ 29071425 (-)
G173339 NA non-coding upstream 26237 29076263 ~ 29077297 (-)
G173288 NA non-coding upstream 28388 29078414 ~ 29080610 (-)
G173349 NA non-coding upstream 57850 29107876 ~ 29108297 (-)
G173431 kif26b,kif26ba,LOC108415509 non-coding upstream 181587 29231613 ~ 29231919 (-)
G172919 NA other downstream 924348 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 926002 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 1111135 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 1184591 27565258 ~ 27652301 (-)
G171734 NA other downstream 3254365 25578939 ~ 25582527 (-)
G173434 kif26b,LOC107589674 other upstream 185893 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 195943 29245969 ~ 29329076 (-)

Expression

G173287 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G173287 Expression in each Bioproject

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G173287 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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Co-expression Network