G173289


Basic Information

Item Value
gene id G173289
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28862908 ~ 28864167 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205162
CGCGCGCACGCACGCacacacacgcacacagacgcacatcaccattattatttaatcatcaaaaaacacttcacacaaatacaacacattATTGTGTATCTGTATTATTGTGTATCGTGTCTTtatatacacaataaacactgagtgatgaagcagttactgtcACCTCCACgacgttgattagtttcctataacagcatgtccccgactgttttattcctcttacacctcaGCTCTTTACCAACacttacaattttttatttattaaagaacaacataacactcgttccctcacctgcgtctctttattctctctcttcaagttaataagacaaaaataaagacgcagcttgttccgcatgttactgagaaaccgcaaagaagcgtaaactcctccgtcctgaagacgtcgcaaaacttacagttacagctttaccttacaaagcgctgacactggagactccttccatcaatgttaactAAACGTacaatctccttacagaaaacgttcgctgtacacgtccctgtgaacgagctgttactatagaaacgataacgtatcagaacgagcgcattaatataaacctgcgctactgtcagagctgctgttatagagaattaatcaacacctgacgaccaatcagagtgcagaactcagcagcagtgaggtgTTACCAGCGACTTTAGTTCTGATCTGCATGTTCTCCTGCAGGTTTGCCAGAGGTTCCAGGTACTCGGGCGCTTTTCCTGAGATCACTTCCTGTAGTTTAGCGTCAACCTGACTCAACCGCTCCTTAtacagcctgaaacacacacacacacacacacacacactgatcacactctgtttataattaacacACTGATCTGTCAGGCTGCTGGTGTTTAACAGTTCAGGCTCTGACTAGTTACACAGCAGGAAAGTCAGAGCCGTGAAACCTGATCATCTCAGAGCTTTGAAATGTTCTGTATCTTGTTAGTGCTCTTGTAAACGCTAACGCTAACGCAGCGGGAGCTACAGCGCCGCGGGGGCGGAGCAGACGGTACAGGAAGTGGACGAGGGCGTGTTTAATAGGAATAGAACGAGGCTTCAGATTCGAGTACGCACTGATCCTTCAGGTCTGTAAACTGCTTCTCCAGGTTCGTCATCTCATCCAGACATTCCAGCCGTCTCCTCTCACAGTCCTCATCGtccatctctacacacacacac

Function

NR:

description
PREDICTED: integrin alpha-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205162 True 1213 lncRNA 0.45 2 28862908 28864167

Neighbor

gene id symbol gene type direction distance location
nfkbiab nfkbia coding downstream 90746 28768475 ~ 28772162 (-)
ppp2r3c ppp2r3c,LOC107682116,LOC107725453,LOC106611177 coding downstream 120837 28736318 ~ 28742071 (-)
LOC113534010 fbxo33 coding downstream 133421 28722659 ~ 28729487 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding downstream 171506 28687175 ~ 28691402 (-)
pnn pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 coding downstream 176657 28680699 ~ 28686251 (-)
lrrc57 lrrc57,LOC107682003 coding upstream 3504 28867671 ~ 28877881 (-)
il17a/f2 LOC108269798 coding upstream 18085 28882252 ~ 28885109 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding upstream 52209 28916376 ~ 28928895 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding upstream 123192 28987359 ~ 28996157 (-)
mrpl57 mrpl57 coding upstream 208537 29072704 ~ 29075467 (-)
G173282 NA non-coding downstream 300 28861401 ~ 28862608 (-)
G173274 NA non-coding downstream 104002 28757778 ~ 28758906 (-)
G173255 NA non-coding downstream 146237 28715522 ~ 28716671 (-)
G173240 NA non-coding downstream 194688 28667813 ~ 28668220 (-)
G173110 NA non-coding downstream 305627 28557079 ~ 28557281 (-)
G173268 NA non-coding upstream 1746 28865913 ~ 28866675 (-)
G173292 NA non-coding upstream 7303 28871470 ~ 28871955 (-)
G173293 NA non-coding upstream 9276 28873443 ~ 28874318 (-)
G173260 NA non-coding upstream 69793 28933960 ~ 28985241 (-)
G173262 NA non-coding upstream 150182 29014349 ~ 29014929 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 2897 28798149 ~ 28860011 (-)
G172919 NA other downstream 950364 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 952018 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 1137151 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 1210607 27565258 ~ 27652301 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 36737 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 371752 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 381802 29245969 ~ 29329076 (-)

Expression


Co-expression Network