G173338


Basic Information

Item Value
gene id G173338
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29070035 ~ 29071425 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205226
gtgtgtgtctctgtgtgtgtgtgtgtgtctgtgtgtgtgtatgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgcgtctcaCTCAGTGTGAATGTTTTTACAGCCTTAGATGAAAGATGAAGAGTGTTGAGTTTAATTCCATCCTGTTCTTTAATTATTTGCTCAGAAGGAataaacaggtttatattaatgcatgtgttctaataagttatcgtttctatagtaacagctcattcacaggggcgtTTACGCTCCACGCAATCTAAGacaaataatgaacatttaaaaCCGTGTTTCTGtagggagatgtttatttttaatgtctatggaaggagtctccagtgccagtgatTTGCAACTccacggtctggagtgtgttactCCCTACATCATACTAACAACACCGCttaatattattaacaattaAAGATCTAATAGTCTAATCTtcacatttataaacacacacacacacacacacttctgctgtCACTGTGTTCATCGTTCATCGTCACATAGCGCCCCCTACTGACACACACCTGATAACAGGCAGGCTTCATATTCATTTCTGCACTTTTTAACTTTAGCCTGAACGAAGTCTCGCGAGATTTAAGCTGAGGGTCTTTTGGCTCTCGCGAGAATACcgctgtgtgtttctgtatccTAGCAACCGGAGTGCGGGTCATGGCGGAGGATAAACACTCGGCAGgagctGCAGCGGCGCTGAACAGGAGGATCAGCGCCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205226 True 814 lncRNA 0.44 2 29070035 29071425
Loading

Neighbor

gene id symbol gene type direction distance location
khk khk,LOC107729261,LOC107693158,LOC107725530 coding downstream 73878 28987359 ~ 28996157 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding downstream 141140 28916376 ~ 28928895 (-)
il17a/f2 LOC108269798 coding downstream 184926 28882252 ~ 28885109 (-)
lrrc57 lrrc57,LOC107682003 coding downstream 192154 28867671 ~ 28877881 (-)
nfkbiab nfkbia coding downstream 297873 28768475 ~ 28772162 (-)
mrpl57 mrpl57 coding upstream 1279 29072704 ~ 29075467 (-)
calm1a LOC108270185 coding upstream 17747 29089172 ~ 29092223 (-)
ndnfl LOC108270182 coding upstream 46948 29118373 ~ 29130728 (-)
LOC113525666 LOC108261332 coding upstream 66595 29138020 ~ 29146605 (-)
G173262 NA non-coding downstream 55106 29014349 ~ 29014929 (-)
G173260 NA non-coding downstream 84794 28933960 ~ 28985241 (-)
G173293 NA non-coding downstream 195717 28873443 ~ 28874318 (-)
G173292 NA non-coding downstream 198080 28871470 ~ 28871955 (-)
G173268 NA non-coding downstream 203360 28865913 ~ 28866675 (-)
G173339 NA non-coding upstream 4838 29076263 ~ 29077297 (-)
G173288 NA non-coding upstream 6989 29078414 ~ 29080610 (-)
G173349 NA non-coding upstream 36451 29107876 ~ 29108297 (-)
G173431 kif26b,kif26ba,LOC108415509 non-coding upstream 160188 29231613 ~ 29231919 (-)
G173433 NA non-coding upstream 162509 29233934 ~ 29234260 (-)
G173287 NA other downstream 20009 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other downstream 161483 28900904 ~ 28908552 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 210024 28798149 ~ 28860011 (-)
G172919 NA other downstream 1157491 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 1159145 27899482 ~ 27910890 (-)
G173434 kif26b,LOC107589674 other upstream 164494 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 174544 29245969 ~ 29329076 (-)

Expression

G173338 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

G173338 Expression in each Bioproject

Bar chart with 3 bars.
G173338 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network