G173438


Basic Information

Item Value
gene id G173438
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29244000 ~ 29244985 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205347
AAAAACAAGGCAAAGAAAACGAGTGCACTTCTAAATCATTCTTTATTTACGTCCGTCTCAGATTctcattcagatttttttcacaggacagaaacacactgacgtTGTGCCACTAATCTCCATAAACACGTCATTTCCCGTCTAAATATGATCCGGATCGCTCGTTCAGATCAGGAATGTTTCATGAATGTGATCTGGAGTGGCAGAAACAACGactcaagcaaaaaaaaagagagagaataaaagaccACATTTCTTACAGCATAAACACCACGTGTTtccttttttatctttaaaacgCAGAATTTCATGGTGATAAAATACATTTGTATGAATAAGCATGACacaaaaaatgagaaagaacaAACTATAATATATGGATATATTTCTGTATGACGTACAGATTAAATGCATAGTATTTGGTGGAGCGTAAAGTaaattatacactacacacagctctgaggtaaaaaataaataatatcctTCATAAAAAAGCGTGATGaagaaatgtgttgttttttcttttttcttttttttttagtatacaAACATTTAGACTGTCTCGAGCACagaatagaaacattttattttattaaagttgaATAATTGGCAGCACGACGGTGAGACCACACAGAGTGAAAACACACggagtgaaaacacacGGCGAGGATCTTCAGCATGCAGCAGATCACCAGCAGGACGAAGATTTATTTCCCTTTAATTAAAgccaaataattaaacacatttaacaggAGCAGCGTGAAGAccatcaatatttataattattcatttaaataccTGACGTGTGTCATTCTATAACAGGGACTTTCATCCAATTCCACAACATACTAATCACttaccctaacccctacactctacaccctacaccctaacccctacactctacaccctacaccctacaccctacaccctaaccccta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205347 True 941 lncRNA 0.36 2 29244000 29244985
Loading

Neighbor

gene id symbol gene type direction distance location
LOC113525666 LOC108261332 coding downstream 97395 29138020 ~ 29146605 (-)
ndnfl LOC108270182 coding downstream 113272 29118373 ~ 29130728 (-)
calm1a LOC108270185 coding downstream 151777 29089172 ~ 29092223 (-)
mrpl57 mrpl57 coding downstream 168533 29072704 ~ 29075467 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding downstream 247843 28987359 ~ 28996157 (-)
G173437 NA non-coding downstream 610 29242100 ~ 29243390 (-)
G173435 LOC107729288 non-coding downstream 2385 29239919 ~ 29241615 (-)
G173433 NA non-coding downstream 9740 29233934 ~ 29234260 (-)
G173431 kif26b,kif26ba,LOC108415509 non-coding downstream 12081 29231613 ~ 29231919 (-)
G173349 NA non-coding downstream 135703 29107876 ~ 29108297 (-)
G173442 NA non-coding upstream 32216 29277201 ~ 29307478 (-)
G173443 NA non-coding upstream 87417 29332402 ~ 29334044 (-)
G173447 NA non-coding upstream 94194 29339179 ~ 29339611 (-)
G173449 NA non-coding upstream 95115 29340100 ~ 29340760 (-)
G173441 NA non-coding upstream 99386 29344371 ~ 29349899 (-)
G173434 kif26b,LOC107589674 other downstream 4730 29235919 ~ 29239270 (-)
G173287 NA other downstream 193974 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other downstream 335448 28900904 ~ 28908552 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 383989 28798149 ~ 28860011 (-)
G172919 NA other downstream 1331456 27912237 ~ 27912544 (-)
smyd3 smyd3 other upstream 984 29245969 ~ 29329076 (-)

Expression

G173438 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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G173438 Expression in each Bioproject

Bar chart with 3 bars.
G173438 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network