G173441


Basic Information

Item Value
gene id G173441
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29344371 ~ 29349899 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205350
TTCACATAATTCATATATACattaatgaaggaaaaaaaaaatcttttcttaaaaaacaaactgtgCTGTCTCGCAAAACACCAGCACCAGAAACACCACGTTATAGTTACTTTATACAAAAACACTTTATAGGACGAGTTGCACAAAAACGATTTCTATAAAATATCATCACTCCGCCGTGTTCAGGAGAAACCTGGCGGGACTCAGACACGCCGTCCGACAGCGTGGAGCTGAACtgctgcctcacacctccatTAGCTGTTACACCTCCATAAATCgggattatttttattgttaatgttatAAGATGATAAATTATGAAGTATAAGCTCGTGTGTAACGTTCTGATGTGGATGTTGGCTTTTGAAAGgtaatttgttgtttattataaatatattgttgTTTATTGAAGGCTTTCACAGTAACATTATTTTACACCTACAAAAGTCCAGTGCTgctttactgtttaaaaaatatgaaattaacCAGAATTATAACATTCACTTTGAtcttggattattattattattattattattattattattattccacgATTATAAGTGTTGATAAATAACTATGCTGATGATGAAACAACATCATACTATAAAGTCATCATATTGTTCCaactgtctgtgcatgtgtctcGTCGTAAagcaagctgtgtgtgtgtgtgtgtatgtgtgtgactgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatatgtgagtgtgtgtgtgaacatgtgtgtgcgtgtgtgaacgtgtgtgtgcatgtgtgtatatgtgtgtgagtgtgtgtgcgtgtgtgtgaacgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtTTTTTATCCGCAGCCCGTGTTTTTGGTGTTCTCCAGGATCTCGTCGTAAAGCCAGCTCTGTGTGAACTCCTCTGATTTCTCCATCAGCTCGAACAGGCGTTTGTACTCGCTCGGGGAAATCTGTCCCGTCATCACGTCCTCAAACAGTCCCATCTGCAGCAGGACGTCTGTGCCGCTGCCCGCGC
>TU205351
cgtgtgcgtgtgtgtgtgtgtaGTTTTTATCCGCAGCCCGTGTTTTTGGTGTTCTCCAGGATCTCGTCGTAAAGCCAGCTCTGTGTGAACTCCTCTGATTTCTCCATCAGCTCGAACAGGCGTTTGTACTCGCTCGGGGAAATCTGTCCCGTCATCACGTCCTCAAACAGTCCCATCTGCAGCAGGACGTCTGTGCCGCTGCCCGCGC
>TU205352
TTCACATAATTCATATATACattaatgaaggaaaaaaaaaatcttttcttaaaaaacaaactgtgCTGTCTCGCAAAACACCAGCACCAGAAACACCACGTTATAGTTACTTTATACAAAAACACTTTATAGGACGAGTTGCACAAAAACGATTTCTATAAAATATCATCACTCCGCCGTGTTCAGGAGAAACCTGGCGGGACTCAGACACGCCGTCCGACAGCGTGGAGCTGAACtgctgcctcacacctccatTAGCTGTTACACCTCCATAAATCgggattatttttattgttaatgttatAAGATGATAAATTATGAAGTATAAGCTCGTGTGTAACGTTCTGATGTGGATGTTGGCTTTTGAAAGgtaatttgttgtttattataaatatattgttgTTTATTGAAGGCTTTCACAGTAACATTATTTTACACCTACAAAAGTCCAGTGCTgctttactgtttaaaaaatatgaaattaacCAGAATTATAACATTCACTTTGAtcttggattattattattattattattattattattattattccacgATTATAAGTGTTGATAAATAACTATGCTGATGATGAAACAACATCATACTATAAAGTCATCATATTGTTCCaactgtctgtgcatgtgtctcGTCGTAAagcaagctgtgtgtgtgtgtgtgtatgtgtgtgactgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatatgtgagtgtgtgtgtgaacatgtgtgtgcgtgtgtgtgcgtgtgtgtgaacgtgtgtgtgcatgtgtgtgtgtgtgtgtgaacgtgtaGTTTTTATCCGCAGCCCGTGTTTTTGGTGTTCTCCAGGATCTCGTCGTAAAGCCAGCTCTGTGTGAACTCCTCTGATTTCTCCATCAGCTCGAACAGGCGTTTGTACTCGCTCGGGGAAATCTGTCCCGTCATCACGTCCTCAAACAGTCCCATCTGCAGCAGGACGTCTGTGCCGCTGCCCGCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205350 True 1036 lncRNA 0.39 2 29344371 29345460
TU205351 False 208 lncRNA 0.55 2 29344371 29349899
TU205352 False 1000 lncRNA 0.39 2 29344371 29345460

Neighbor

gene id symbol gene type direction distance location
LOC113525666 LOC108261332 coding downstream 197766 29138020 ~ 29146605 (-)
ndnfl LOC108270182 coding downstream 213643 29118373 ~ 29130728 (-)
calm1a LOC108270185 coding downstream 252148 29089172 ~ 29092223 (-)
mrpl57 mrpl57 coding downstream 268904 29072704 ~ 29075467 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding downstream 348214 28987359 ~ 28996157 (-)
G173449 NA non-coding downstream 3611 29340100 ~ 29340760 (-)
G173447 NA non-coding downstream 4760 29339179 ~ 29339611 (-)
G173443 NA non-coding downstream 10327 29332402 ~ 29334044 (-)
G173442 NA non-coding downstream 36893 29277201 ~ 29307478 (-)
G173438 NA non-coding downstream 99386 29244000 ~ 29244985 (-)
G173457 NA non-coding upstream 5199 29355098 ~ 29359259 (-)
G173458 NA non-coding upstream 6573 29356472 ~ 29358281 (-)
smyd3 smyd3 other downstream 15295 29245969 ~ 29329076 (-)
G173434 kif26b,LOC107589674 other downstream 105101 29235919 ~ 29239270 (-)
G173287 NA other downstream 294345 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other downstream 435819 28900904 ~ 28908552 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 484360 28798149 ~ 28860011 (-)

Expression


Co-expression Network