mdga2a (mdga2,mamdc1)


Basic Information

Item Value
gene id mdga2a
gene name mdga2,mamdc1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21781020 ~ 22088387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919091.2
aaagcctttctAAAGCTCCTTCTGAGGTAGCTATTCTTGTGTGCCCGTTTTCTTTGCCCACCATAGTGAATCgcttatttttttaacactgtcAAGAATATATGATGAAGAAAACCCAAATCCATAGACGTATATTAAAACATGGCATTTAAAATAGCGTCTTTGGTAAATAGAATCGTTTCCTGCATCCCTTCGCATCTCCGCTGTGTTGGCAAACTGGGCGAGACGTAAAGAGCGCGCGTGCCgtgtttcaaatattttttgcGTCCGAAGAACCTGGATTGGACATGTTGACACTAACATAAAAATGGATGTAGTTTTTGCTCTCCTGTGGCTGCTAGCTGTGTTCCTAAAGGGCATTCTCTGCCAGGGAGTGTACGCTCCTCCAACTGTTCGCATCATTCACTCTGGTCAAGCATGTAATGTGGAGGAAGAACGctacactgagagagtgtataCAATCCGGGAGGGTGAGACGCTCGAGCTGGCCTGTATAGTTTCAGGACATCCACGACCACAGATACGATGGACCAAGACAGCGGGCAGTGCTTCTGATCGTTTTCATGAGTCCAGCGTGTTCAATGAGACTCTGCGCATTACTCACATCCAGAGGCACCATGGTGGCCGCTACTACTGCAAGGCAGAGAACGGCCTTGGCGCCCCTGCCATTAAGTCCATTCGAGTAGACGTCTACTGTGAGTTACCCTCTACCTATCTGGATGACCCAGTGGTGACAGTACACCAAAGTGTGGGAGAGGCTAAGGAACAATTCTACTATGAAAGAACAGTTTTCCTCCGGTGTGCTGCCAACTCCAACCCGCCAGTGCGTTACAGCTGGAGACGTGGACATGAATTTTTGTCCCAAGGCTATGACAAGGGTGTGGAGATCTATGAACCTTTCTTCACACAGGGTGAAACAAAGATCCTCAAGCTGAAAAACCTTCGCCCTCAGGACTATGCCAACTACACATGCACTGCTTCAGTACGCAGTGTCTGTGGCATTCCTGATAAGAGTGTACTCTTTCAGCTCACCAACACAACAGCATCTCCAAGTATTAAGCTGCTAGTGGAGGATCCCATAGTGGCCAACCCAGGACAGACAGTAACACTTGTATGCATAAGCACAGGAGGAGAACCTATGCCAGTCCTGACATGGGTACGACATAGTGAGACACTCCCACAAAATAGCCTTCTGAATGGCGGCACTCTTACTATACCTGCCATCATCACAGAAGATACAGGCATCTACAGTTGTGTTGCTAGCAACAATGTGGGAAACTCAGCCAAGAAATCCACCAGCATCATTGTGAGAGCTTTGAGGAAAGGCCGTTTCTGGATTACACCTGACCCATATCACAATGATGACAACATCCAAATTGGGCGCGAGGTGAAGATCTCATGCCAGGTGGAGGCCACGCCAGCTGAGGAGCTAATATTCAGCTGGCTGAAGAACGGGCGAGCTCTGCGCAGCTCAGAGCGCATGGTCATCACCCAGACTGACCCTGATGTTGCACCAGGAACCACTAACCTGGACATCATTGACCTCAAGTTCACAGATTTTGGCACCTACACCTGTGTGGCATCGCTCAAAAATGGAGGCATACCTGAGATTAGCATTGATGTTAACATCTCATCCACCACAGTTCCCCCAAGCCTGACGGTCCCAAGAGGGAAGTCCCCTTTAGTGGTACAGGAGACTGAGACAGTGGAGCTGCAGTGTCTGGTGTCAGGCAAGCCCAAGCCCATAATCCTGTGGTCCCATGCTGACAGGGAAGCGCCCATGCCAGATGGAAGCATGCAGATGGAGAGTTACGATGGAATTCTGCGAATTGTCAATGTCTCACGTGACATGAGCGGTACATACCGCTGCCAGACCAGCCAGTACAACGGCTTCAACGTCAAGCCCCGGGAGGCTGTCATTGAGCTCATTGTTCAATATCCCCCTGCAGTGGAGCCAACATACACTGAGCTACGCCAGGGCCTGGGCAGAGCATTCACAATGAATTGCAGAGTACTACGAGCACATCCATCTCGTGTGCTGAAGTATGAGTGGAAGCTGGGTTCACGCCTCCTCACCATGGGCCAGTTGGATACACGTGATGACACTGAGTACCATGTCAGGGCACTGAACCGTGAGGGCTATGGTGCCTACACCTGCGACATCAGCAATGAGGCTGGTGCTGGCCGCTGTACCTTCCACGTGACTGGCAAGGCCTTTGCTCCAGAGTTCTACTATGACACATATAGTGCGCTGTGGCAGAATAAGCCCAGAGTTTATGGTTTTAAACTCCAATGGACACAGATGAACCCCAGCGCAGTGGACCGCATCATGGCCTACCGGCTTGGTATCAAACAGACAGGACAACAGAGATGGTGGGAGCAGGAGATTCCCATGGAAGGTACCATTCAGAAAGGTGAGCTCATTACCTACAACCTGACTGAGCTTGTTAAACCTGAGGCTTACCAGGTGCGCCTCACCCCCATCACCCGCTTCGGAGAAGGAGATTCCACTGAGAGGATCATCCGCTATAGTGCTCCTGTAAACCCTCACTGGAGTAAATTCCACTGTGGCTTCGAAGAAGAAGCCTTATGCATGTTCACCCAAGACAAGTCAGAggaatttgattggacaagacATAGTGCTGCCATCAGGGACACCAAGTACACTCCCAATACTGGACCCAGCAGTGACCGTAGTGGTTCAAAGCAAGGTTATTACATGTACATTGAAACATCACGCCCTCGTCAGGAACGAGATAGAGCACGATTGTTGACCCCACTATTCAGCGTTGTTCCAAAAAAACCCTATGGGAATGTGGCCAATACTCCATCCTACTGCTTTAGCTTGTACTACCATATGTATGGGAAACATATAGGCACACTGAATGTGTATTTAAGACAGAAGAGTCAGACTGGTGAGGACAGCCTTGTGTGGACCTTGAGTGGGAGCCAAGGAGACCACTGGAAACAAGCTAGGGTAAACATTCACCCTACATCCTCCTTTCAGATGATTTTGGAAGGCATTCGTGGTTCTGGCATTGAAGGCGATATTGCCATAGATGATGTTGCCATCGAGGAGGGAGAATGTCGAGACCCACCTCCTAATAGTAACCTTAGGTCCCTGGCCCCTTCCGCAGCAAAGCATATATGGAAGTTGTGTATCACTCTGCTCTTGGTCTTGGGTGGCCAACGGAGcatgGCTCCATAAACACAGGCTGCGCTCTGCCCACTGAATTACAATCTGTGCCAGTCTGAAGCTGTGCCTGCAACAGCAGTTGTTTTCTTGATGTACAGTAGGAGACTGTCTTTTTGCAAGACCTTTCATGAGGCCCCTCGACTTCTGCTGCCTGCAATGGAATCAAGTGCCTTCAGAACTTCGTGTAACATCATTCTGTTTAAATACCTGCTGAGCAATTGATCTTCGCCATATTTATAACAACAAGACAAAGTGCAAAACTGTAAGAAGTGAACATGACAGATGGCTGACCCCAGTACCACATCCTGTCCCACCACAGCTTGTTATTCACATCATATGGTCATTCTTTTGTTTGACAGCCATTATTTTAAGGCTTACAACCTGTCATGCTCCAAATCTTACTGAGGTGGAGAAATTGAGAACTATGATAGAATTATTGGAGGAAAAAGACTGTTCCTTACACAGTGGACATCATGTATGAAAGAGACAGATCTGTGCTCTGGGTAAAAAGAAATACAGCTAGGAGGGTCACTGTGAAATCCTTCTTCACTTCAATAAGTGTCTTGTGCtgttgaagattttttttaaaggactgAATGGTACAAAGGCTGATATGTGTTTTATCTAAATAGTCTTAATGAGCTGGGTTCATCAACTTGGATTCTtacaaatacatattttattatcctgctgattttacacaaactctttaaaaaaaatctctgaactACCTGAGGCCATCTGTTACCTTAACCAGCTGGTTTTTGGAAATGTATTGTTCATAAGGTTTGTTTCTGGGAAAGATTAGTTTTCCTCCCTCCCTCAATATGTTGTTTCAGGCaacattttgctttgttttaaaaCGTAAAATTCCCTCTTTATTCTtgtattattaaacaaaatataatatgaaaCTATAGTACCATATTATGAATATGACAATGTAAAgtttattagatttatattcaaatatattggATAGGACCTCCTGTCCAGAGgaattcacatttttaaacactcATATGAAAAAGCACAACATGTAATCACTGTCacaacacactaaacacagtaCCTCCCACAACCAATACGTTTTTTCTTAAGGAAGGACTCCCCAGTAATGTGATATTTTAAATCTCCGATCAATAAAAAGATTTCCTGATAA

Function

symbol description
mdga2 Predicted to be involved in regulation of presynapse assembly; regulation of synaptic membrane adhesion; and spinal cord motor neuron differentiation. Predicted to act upstream of or within neuron migration and pattern specification process. Predicted to be located in GABA-ergic synapse. Predicted to be active in glutamatergic synapse.

NR:

description
PREDICTED: MAM domain-containing glycosylphosphatidylinositol anchor protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919091.2 True 4358 mRNA 0.46 19 21781020 22088387

Neighbor

gene id symbol gene type direction distance location
mis18bp1 mis18bp1,LOC108261907 coding downstream 20719 21742755 ~ 21760301 (-)
heatr5a heatr5a coding downstream 43582 21652713 ~ 21737438 (-)
hectd1 hectd1,LOC107582380,LOC107697712,LOC107719534,LOC100380626,LOC102302438 coding downstream 131354 21598109 ~ 21649666 (-)
strn3 strn3,LOC107590905,LOC106611207,LOC107694787 coding downstream 189653 21557083 ~ 21591367 (-)
prkd1 prkd1,LOC107590910,LOC107719483 coding downstream 342911 21391646 ~ 21438109 (-)
pole2 pole2 coding upstream 49307 22137694 ~ 22146800 (-)
lrr1 lrr1 coding upstream 84879 22173266 ~ 22183862 (-)
LOC113529708 nemf coding upstream 109166 22197553 ~ 22241003 (-)
wdr20a wdr20 coding upstream 173161 22261548 ~ 22274855 (-)
dync1h1 dync1h1 coding upstream 197461 22285848 ~ 22348153 (-)
G169653 NA non-coding downstream 12278 21768369 ~ 21768742 (-)
G169651 NA non-coding downstream 13095 21767688 ~ 21767925 (-)
G169650 NA non-coding downstream 13868 21766102 ~ 21767152 (-)
G169648 NA non-coding downstream 15799 21764958 ~ 21765221 (-)
G169647 LOC108270035 non-coding downstream 18234 21760524 ~ 21762786 (-)
G170008 NA non-coding upstream 3573 22091960 ~ 22092303 (-)
G170017 NA non-coding upstream 23192 22111579 ~ 22111916 (-)
G170020 NA non-coding upstream 26008 22114395 ~ 22114750 (-)
G170120 NA non-coding upstream 167230 22255617 ~ 22256725 (-)
G170129 NA non-coding upstream 202094 22290481 ~ 22326447 (-)
bmf1 bmf other downstream 661395 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 963581 20813689 ~ 20817439 (-)
G169119 NA other downstream 1215221 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 1450274 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 1479466 20298511 ~ 20301554 (-)
G170023 NA other upstream 27178 22115565 ~ 22115876 (-)
G170435 NA other upstream 767107 22855494 ~ 22863767 (-)
greb1 greb1 other upstream 1060356 23148743 ~ 23179511 (-)
luzp1 luzp1 other upstream 2401851 24490238 ~ 24544079 (-)
G171256 NA other upstream 2692895 24781282 ~ 24926224 (-)

Expression


Co-expression Network