lrr1 (lrr1)


Basic Information

Item Value
gene id lrr1
gene name lrr1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22173266 ~ 22183862 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919112.2
GTAAGAAGGTGCTGCCTTGTTTTGCTGCGATGAAGTTGCATTGCGACGTTGAAGTTGTAAATCGGATGCTGCCCACATTCGGCGTCAAAAGCAAAGGCAGAGGATCCAGGGCCGTGCTGTCTATTGGGAAACATGTGGATAAAAATACACAGCGGACTAATGTCTATTTATTGATATGCACAGCAAAAGACAGAGCTGGATCCAAGTACAAGCTGAAGGAGAATATAGAGAAGTTTTTCACATGCTTTGTAGAAGAGGGGAAAGCCACTGTACGACTTAAAGAACCCATGGTGGACATCTGCATGAGTAAGgCGGATACTGCCAGCCTGAAAACCTTCCTCTCGGCTGCTCAACTTGCACACAGAGGAGCCGTTAGAGACAGCCTTGCCCTCTCTACACTTACCCCTGTTCGTGCCAGAGATGTGGAGAAACCCAAAAAGAAGCTCACCATCATCTCCAAGAAGGACTATCCCCTCACATCCAGCTTCCCCTACTCTCTGGAGCAGCTACAAGTGTCGTACTGCAAGCTGTCTAGGGTGGACATGCGCATGCTGTCTCTAAAATCACTGCGAACACTTGACCTCAGCAATAACCACATCAAGAAGCTCCCAGACACCATTGGTGACCTCCACTTCCTGACAGAACTGATTCTCCACAACAACCACTTGGAGAGCTTCAGTGAAGCACTGTGCCTCTCCAGTCTTCAGAAATCTCTGCAGCATCTGGACCTGAGCCAAAATTGCCTAAAGCTGCTGCCTGCTTGCTTTTGCAAGTTGCATGAGCTTGTTAACCTCAAACTGGATGACAATAAGCTGGTACAGCTGCCCTTTCACATCGGCCAACTCGCCAAGATGCGCTTCCTGTCAGCTGCCCACAATAAGCTCACCGTGCTGCCCGGAGACTTCTGCAAGCTGTCACTGGAGAACTTGGACCTGTTCGGGAACCCCTTCGCTCAGCCCAATCCTCTTGATCACAGCATTCAGCTCACATTACCTCTCAATCTGGAGGAGCTGGCCTCCAGGGCTGTGCTCAACTATAGAATCCCTTACGGGCCTCATCTCATCCCCTTCCACCTTTGTGGTGACATGGAACTGGCAAAGTTGTGCAACTGCGGCTGCAGCTGTGTAAGCTCGTACATACAGACGGCTGTAAGTATGAACCTGCACCTAGTGTCTCACACTGTGGTGCTAGTGGACGACATGGGAGGCACAGAGGCTCCCATTCAGCGCCATTTCTGCTCCCTCACATGCTACTGCCAGTTCTTGGACAGCTGTGTGCAGAGAGGCCTGAGCTGAGAAGAACATAACGTCCTTGAGAGAAGAAGCTCTTCCTTCCATTCCTGGACACAATGACCGTTATAATCAGCAATCCTGGTTGCCGTGGTTTATCCAGTTTCTGCTTGTTTGTTACAGTTATGTGTGGTATTGCCACATCAGTAATGGATTAGCTACAGGTCAGTGTTAACCCATCATGAAACATCACTTGGTATGAAGTACCTTGTGCTCTCATGgtcataatttattattatttttatttcaaattgaCACTACAGATGGAAAGTTGAAGCAGGGCTTATTCTTCAGACttattgtttttctgtgttgaaGGAGGTACAACCAAATAAATATCAGATAGTTTTAAAGGCAGATTGATGATTAGCAAAACAAGGTAGTGTTATGAATTGGTCGATAATTGTCCATGATTTTGTGTATGGCATGGTTCTTGTTCTTTGGATTTTGGTGtattatcaaataaataaaaatttttgaaCCTCTAAACTGAAACTCTAAAGTTCAAAATTAAGTACCAAAACTCTAATTTCACATTATGTTGAACAAATTACCAGACAGTTCATCTCATGACAGTTCATCTCATGACTGTTAATCCTGTTAATTGGAGAGCAATggaacaattttattttaccttttaaaACAGGATTTCATGTACATTTAATGGTGCTTATGGAAAACCCATGGcctaaatattacagaaatcgAGTAGGTCAGTCGTTGTCCTTATTAAGTCTTATTTATATAAGTTTGCATCCCCACTGATGAGAACtacttactttatttttatgtacCTCATTGGAAACAGGGACACCACACTACAAAAGTTAAGATAAAGGAGATAGGGAGATAAaggagactgttgtgtgtgaaatgggAAATTGTGtgtgatcagcagtttatgaaacaCTCAAGCCAGCCCTACTggtaccaacagccatgccacaatcaaagtcacagagatcacactttttt

Function

symbol description
lrr1 Predicted to enable isomerase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytosol.

NR:

description
PREDICTED: leucine-rich repeat protein 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K10348 LRR1, PPIL5; LRR-repeat protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919112.2 True 2264 mRNA 0.44 4 22173266 22183862

Neighbor

gene id symbol gene type direction distance location
pole2 pole2 coding downstream 26466 22137694 ~ 22146800 (-)
mdga2a mdga2,mamdc1 coding downstream 84879 21781020 ~ 22088387 (-)
mis18bp1 mis18bp1,LOC108261907 coding downstream 412965 21742755 ~ 21760301 (-)
heatr5a heatr5a coding downstream 435828 21652713 ~ 21737438 (-)
hectd1 hectd1,LOC107582380,LOC107697712,LOC107719534,LOC100380626,LOC102302438 coding downstream 523600 21598109 ~ 21649666 (-)
LOC113529708 nemf coding upstream 13691 22197553 ~ 22241003 (-)
wdr20a wdr20 coding upstream 77686 22261548 ~ 22274855 (-)
dync1h1 dync1h1 coding upstream 101986 22285848 ~ 22348153 (-)
LOC113534106 NA coding upstream 398920 22582782 ~ 22737495 (-)
LOC113533941 fut8a,LOC108270174,LOC108433921,LOC107752771,LOC107592788,LOC107674109 coding upstream 584080 22767942 ~ 22833992 (-)
G170020 NA non-coding downstream 58516 22114395 ~ 22114750 (-)
G170017 NA non-coding downstream 61350 22111579 ~ 22111916 (-)
G170008 NA non-coding downstream 80963 22091960 ~ 22092303 (-)
LOC113529722 NA non-coding downstream 175945 21992957 ~ 21997321 (-)
LOC117598283 NA non-coding downstream 180431 21991033 ~ 21992835 (-)
G170120 NA non-coding upstream 71755 22255617 ~ 22256725 (-)
G170129 NA non-coding upstream 106619 22290481 ~ 22326447 (-)
G170428 NA non-coding upstream 581978 22765840 ~ 22767776 (-)
G170461 NA non-coding upstream 799119 22982981 ~ 22983368 (-)
G170476 NA non-coding upstream 800089 22983951 ~ 22984361 (-)
G170023 NA other downstream 57390 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 1053641 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 1355827 20813689 ~ 20817439 (-)
G169119 NA other downstream 1607467 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 1842520 20322764 ~ 20330746 (-)
G170435 NA other upstream 671632 22855494 ~ 22863767 (-)
greb1 greb1 other upstream 964881 23148743 ~ 23179511 (-)
luzp1 luzp1 other upstream 2306376 24490238 ~ 24544079 (-)
G171256 NA other upstream 2597420 24781282 ~ 24926224 (-)
G171569 NA other upstream 3074977 25258839 ~ 25259362 (-)

Expression


Co-expression Network