mis18bp1 (mis18bp1,LOC108261907)


Basic Information

Item Value
gene id mis18bp1
gene name mis18bp1,LOC108261907
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21742755 ~ 21760301 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919373.2
CGTTCGCTCGGTGGGAAAATTCAAAAAAACCGCTCACTGCAACGGCGGTGGTTGGGAGATTCAGGTTTCTGTCGTTCAgcaacattttgttttcttcgGAACTCAACAAACCCTCAGAAGTTGCTTGTTTGGTATTATAACGATACGAAGCGTCTATGTTATGCAGAAAATCGTTTCCTTTAGGAATATAGTCGATGAATCCTGGGACGTGGATCCAGCTCCTTCTTGTCATAGCTCATGTATCTCTCTCCAGCCAAGTGTCTGTCACCTCCTCTGGATCGTGAGCTGTATTACACTCCCGTACAAACCAGCACCATGGCAACTCGTGAGCGGGACACGACTGAAACCCCGGCACGGTCAAACAGAGTAAGCAGAAAATGCACTGCAGTAGTGATGAATTCCACAGTACAGGATCATCAGCTTGGAGCCAAGTCCAGGGCAGCCATGACCTGTGAGCTTAGCACCATTAACAACTCAATGATTCCTCTGAAACGAGTCACTGATACACCAGCAAAAGTCTTTGCCAGACTGAAGGCCAAAGTTCAGCAGCAGAactcagaagagcacagagaagTCAATGTCATTCCCAGACAGCTGGGTAGGGGTGTCTCATTATCCACAAATATGCAGCAGCCACCAGTTGATGATGCGACATCAGAAGGACAGGATACATATGTGCTGACACTTTCACCTCCAGAATCCATGAGCAAAAACTCAGAATTAGAAGATCCCCAAATGACATCACATCTTGATGGAGAAGGAGGCCATAAACCTGACTTGGTTCACAaacCTGTTATTGCACTTGAGAAGATGCTCACTGAAACCTTCACCCAGGTAAAAATGCAGCAAAAGAAAGCTGGGATGAACAGCACCAGCAAGTCTACAGATATAAATCGAGAAGCATATGTTTTGCTGGAACGCATGCCTGATGACTTACCTGCTCAGCCAGGACCTGCAAAGCCAATCCAATTAATGAATCGTGTCAAAAATAGAAGTTATCATGGTGTGTTTGGTGAGATGAGTGTAAGGGACGATTCAGAAGGTGTCGCAGATGACGACAGCAATAGGGTGGATACACTTCAGAGGTTGGATATCACTGCCCAAAGCCAGctagagacacagagaccagAGAAAATGTCTAATAGGCAGTGTGAGCCTTTAGAAGCACCACCTCGGACCCTTCCTAATCTGATGGAGGATTCTCTCCTGCAGCTATCACCCCGCATCTCCATCCCCCGGAAGCAAATGGCAGCAGTTAAGTCCAAACAGCAGACTAAAGAAACAGATAAAGCTCTGGATGTAAGGACAAATGTGAACGAGATTCATTTAAGAGATTGGGTCTTGAAGCTACACAACAAAGAACTTATTGTTGATGGCATTCGCATAGACAACAAGATCCCTTGGCACAGTAGTTGCATCACTGAACGCGTTTCAAGTAACATAGTTAAGACTGCATCTGGTGGGACGTATGTTCTTGTTGGAAAGATGTCACACTACCACAACTCATCCTTTCCTTCATGGTTTATGAAGAAGTTTCTTTTTGGCTTTCCGGAAATGTGGAAGGAGTACCTGAATAAATTCTTGGCTGATAATGAAGGaagTGGAAAAAATCAGAGGAACAATCCAGCACCATGTGAACCACAAATGAAATGGCCCTCCAAAAAACAGATAGCCAAACAACTTAAGTCAAAGGACCTGGTGACCCCTGTTAGCTCTGCAGGCAGTGTGCAGCCTCACAGTGCTCCAGTTTCCCGCAGTGGCCGTCTCATCAAACCTCCTCTGGAGTACTGGAGAGGAGGCAGGATCACTGTAGGGCCCGATATGAATGTTACGGTCCATGAGGATTATACGTCAACCTCCATTTTATTGACGccaaAAACAAGACCAGTGGTGATAAAGTCACCAAAATTGCCTAAAGAACAGCCTGTGTATAAATCTCCTGAAATGCAAAACAGCAGTGATGAGGATACTTTGGCACCAAGgagacgtgttaaacaacataaGTCTTGGAGGACTGAGGGAACCAAAGCAAGGGAAAATGCTTCACAGAAGTCTCAGGATGCAGTTTTCAATTCTGGCTCTGGATCAGAAAAAGCCGCTGCCAAAGAGCCTTCTCCTCAGCAAGCACAGTCTGAGCGAATGTACCTGAGGAGGGGACGGTCATATTCTAGAGAGAGAAACTCGACGGGCTCAGAGACTGAGGCATGCAAGTTTGGTGTGTATTCTGCCTCAGCTGAAGATGACGTTTCTGCAATCCAGGCCCCTGAGAGAAAAACTAAAACACTGCTCAACCGGAAGCATCTGCAGAGAATAATTCAGAGTGAGAAGCACTCCACTCCATGCTCAGACTCTGACACCAGTTCCACACAATCTCAAGTTCAGAAAAGTGCAGATTCAGATCACTTATTTACACCTCCAGATCCTACAAAAGGAGGCAGAAGAAAACCCTTGGAGCAGAAAAGAAAACTAGTTCCTCCGATTGCTGCCATGTGTGAGACTAAGGACATAGTGAATAGTAAAAGGAACATGCGGAGGCAAAAGAAGGTTCCACAGAAATATGAGAATTACGCGATGACTGGTGATGAAAGTTCCCCTTCAGAGCTgatcaaagaagaaaaaagcaagAATTCAAAGTCTACTCGGAAAAGGACGAGACAAAAGGAAAGCTCAGGAGCTTCTGAAAGGACAATGAATGGACATGCCCTCCTGGTTGATAAACATATTGAGCAATCTAAAAAGACAGATAATCCTCAGCCTCCTGTGCCAGATAACACTTGCAAAAACCCAAAGCCATCAGTAAGCTGTAAAACAAGCAGAAAGAACAACAAGGAGCAAACTGCAAAGCACCCTGAGAACAAACAAGATGCGCTAGAAGGAGCATGGACTGATAAAGAGCCAAAACTTCATGAGGCTGTGAACTCATTACCCAAGCACAAGAGTGGTTACTGGGTAAATGTCTCACTGGTAGTTGGCACACGTTCAGCTGAGGAGTGCCAGAATCAGTACACTGCACTTTACCAAACTCATGGACGATCCAAAGGAAAACATAAGGCGAAGACTTCTAAAATAGATGAACCAGCAAAAGAAACTGCTCCAATTACTGCTAAGGTTGGTACGCTCAAGAGGAAGAAACAGATGTGGGACTTTTTGGATCATATGCCAAAAGATGATCATGATGACGTCTTTGCCGGCTCACCAATGCGCAATAAACAAATCAAGTTGCCTGTATGGTCAACAAATGGAGATGAGCCAGATTTTGGCCATCTACAAAATCCACAAACCCCCAGTTCAAGCATGTTTTCTTCAGTGAAAACACCTCAGTGTTTGCACATTACACCAGGGATGCTGCGCTCTGTCAACAGggACAACAATGATAAGTATATTTACCACCTACAGAAGGTAAAAAGGCAAGGCAACCATGGCGGAAAAGTAAGCCCTAAGGACAAGTTCACACCTGTTCCATCAGTAAGGAAAACCAAGAAGAGATGTGTGGCTGAAGATGATAACTTTATTGTTTGGAACATGCTCTCTGACAAGGACGGCCCATCaatgagaggagaagaggaggaggaggatgattaTTTCATGGATGAATACTGAATAATAGGAACATAGTCTACAATTACAAGCCTGTATAGGTTGAATAGGTTTCCATTGCATCATCTGTTTTGCAGTACAGTGTTTTGATGTTACTTTTAAAGGAAGTGTTTTAGGTATGTTCTAATGCACCAAGCAAAAGTTCCCTTTTTCTTAAGTAAATTAGAATAATGCAGCTGTCAACATTCCAGCTTTCAGAATCTgacaattttgtaaatatttatataaagtaatGTGAACCGTTTTACgaccttttttaatttttagaaaTGTGTAATTGGTGAGGGTTTAGCCTAAAGTGACCAGATAGTTCTTTGGATGTGTTTggatttcattttgtttttcatctaTCTATTGGATTTCATctattacatttctgttttaaaaagatGGTGTTTTTGTAATTGTGAATAGATTAAtagttaaaaaatgtaaaatgatgtaAACAAAGTTGTCTTGGCTAAGAATACTCAGTGTGATTTAGATTATCAGAACACATATATGACAGTTTAAGCTGTGCAGGCagtactttttgtattttttttttaaagcaagtcATTGCACAACTAAACGAAATTTGCTTGAAGACTTTGCCAGTCAAATTCCTCTGCACTATGTACAATGTGATAACTATAGCTAAcggttcattaaaaaaaaaagtaaaagaaaaaaaaattgcatcagGTTCTGGCATTTGCTGTGTGAGTTCTACTTCTGTAGTCTACAGTTATGTTCAGTCTCTTCTGACAAATTTCacttgaataaataaagtgttggAATCATTCTAA

Function

symbol description
mis18bp1 Orthologous to human MIS18BP1 (MIS18 binding protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919373.2 True 4385 mRNA 0.42 19 21742755 21760301

Neighbor

gene id symbol gene type direction distance location
heatr5a heatr5a coding downstream 5317 21652713 ~ 21737438 (-)
hectd1 hectd1,LOC107582380,LOC107697712,LOC107719534,LOC100380626,LOC102302438 coding downstream 93089 21598109 ~ 21649666 (-)
strn3 strn3,LOC107590905,LOC106611207,LOC107694787 coding downstream 151388 21557083 ~ 21591367 (-)
prkd1 prkd1,LOC107590910,LOC107719483 coding downstream 304646 21391646 ~ 21438109 (-)
ankrd9 ankrd9 coding downstream 559532 21181765 ~ 21183223 (-)
mdga2a mdga2,mamdc1 coding upstream 20719 21781020 ~ 22088387 (-)
pole2 pole2 coding upstream 377393 22137694 ~ 22146800 (-)
lrr1 lrr1 coding upstream 412965 22173266 ~ 22183862 (-)
LOC113529708 nemf coding upstream 437252 22197553 ~ 22241003 (-)
wdr20a wdr20 coding upstream 501247 22261548 ~ 22274855 (-)
G169611 NA non-coding downstream 203210 21539301 ~ 21539545 (-)
LOC113529764 NA non-coding downstream 227766 21506435 ~ 21514989 (-)
G169454 NA non-coding downstream 369714 21368440 ~ 21373041 (-)
G169435 NA non-coding downstream 424315 21318226 ~ 21318440 (-)
G169424 NA non-coding downstream 438218 21304206 ~ 21304537 (-)
G169647 LOC108270035 non-coding upstream 223 21760524 ~ 21762786 (-)
G169648 NA non-coding upstream 4657 21764958 ~ 21765221 (-)
G169650 NA non-coding upstream 5801 21766102 ~ 21767152 (-)
G169651 NA non-coding upstream 7387 21767688 ~ 21767925 (-)
G169653 NA non-coding upstream 8068 21768369 ~ 21768742 (-)
bmf1 bmf other downstream 623130 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 925316 20813689 ~ 20817439 (-)
G169119 NA other downstream 1176956 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 1412009 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 1441201 20298511 ~ 20301554 (-)
G170023 NA other upstream 355264 22115565 ~ 22115876 (-)
G170435 NA other upstream 1095193 22855494 ~ 22863767 (-)
greb1 greb1 other upstream 1388442 23148743 ~ 23179511 (-)
luzp1 luzp1 other upstream 2729937 24490238 ~ 24544079 (-)
G171256 NA other upstream 3020981 24781282 ~ 24926224 (-)

Expression


Co-expression Network