arhgap11a (LOC108270194)


Basic Information

Item Value
gene id arhgap11a
gene name LOC108270194
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20821801 ~ 20835679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919912.2
GAACATTATTGTGCAGCCAATGGCGTCGTGTTTGAGGGGCAGCGCTGCCGTTTGAAACACGTCCACAAAGGAAGTAGTTAGAGAGCTAGAAGTTAGCTAACTGGTGCGTTGGAACGGAAACATTAATGTTGTTCATATAGAAGACGGTTATAATTCGTATTATGTGTAAATGCAGACGGAGGAATGTTAAATGCGTCAAAATGCTGAACAGGTAGGCGGGCTAGTTAGCTAATAGCGCGCATATTGACTGTATAGCAACATAGCGTTAACGTAAACGAGATAGCTTACTGTATGTAGCACCACTTTTCCAGGTGATTAGCCGGGTTATGGTTATGCAGTGAAAGACGAATATAGCTCGCTGTATCAACTGAGAGCACACACGTTTGTTTAGCGTTACTGGTTTTGTTGAAGAGTTTCTTGCAGTCTATGGGAAGGGAGTAAGATTAGCTAAAACCGCACACTTGTGCAGTGTACGTGATATAGGCGTTTGTTTTCTATAGACGTCTCTGAGCACCTTGTTTGCTAAATCTAGCCTAAATAAGAAGCTAGGCAAGTGAGTTCAAttcaaaaagaagaagaggaagcagCAGCAGTATGAAGACTGCAGAGAGAAATGTGGTGCGTCTTGCAGTAGTTCAGCATCTTCGTGCAACTTTCGCCATCAAGACGAAGAACTGGAACAAATGCAAAAGCAGCAAGTCTACAGCAGGCAATGGGGTGAAGGTCTTTGGAGTGGCTTTAGAAAGTCTACCACATTGTCATGTGCTAGACTACGGAGATATCCCCTGCTTCCTAGTGGATGCCTGTACATGCCTTCTGGGGCATTTGGACACAGAGGGCCTGTTTAGAAAATCAGGAGCTATTGTTCGAGTGAAGGCGCTTAGGGTAAAGTTGGATCAGGCCGAAGAGTGCCTGTCCACCGCGCTGCCGTCAGACATAGCGGGACTCCTGAAGCAGTTCTTCAGGGAGCTGCCTGAGCCTCTTCTGGCCACAGACCTACAGAGCAGCTTTCTAAAAGCCCAGGAGCTGCCCACTTTGGAGGAGAGGACTTCAGCAACCCTCCTGCTGTCCTGTGTGTTGGCGCAAGAGAATTTAAACACTCTGCGCTACTTCTGCAGCTTCCTGAAAAGGGTTTCTCAGAGATCTGCTGAAAACAAGATGGACAGCAGCaatctttctgtcattttcGCCCCAAACCTCTTTCACTGGGGGGACGGAACAGAGAAAGTGAACGCCAGCACAGAGAAGAGACTAAAGCTTCAAGCTGCTGTGGTGCAGTGCCTCATAGATAATGCTCAGGGTCTAgGTGTGGTACCAGATTTCCTTATGGCCAAAGTTCCAGCCATGCTAGGTTGTGAATCAGGAGTGTTTTCCCCTTCAGATGCTGTGGAGGAGGGAAACACACCCTCGGGTGTAAAGAGATGCAGGCGCAGTTTAGGAGATATGGTAAATGGAGCTCTGACTAGgttaaaaagtaatagaacCCCTTCAAATACATCTCACCCTGATGGAACAGTCATTTCCACTGGTACCCCTCTTGTTGGAACCCCTAAGCGCAAACTGCCTCTAGAGTCTGGACACAGTTATGGACTCTCCAACAAGAAGCGCAGGTCTATCAAGAACCTCGGGCTGGAACTACTACCAAATGCATTTTTTGGAGGAATCTCCACCCCTGGATCAGTCCACAGTGCCTCAGGAACCCTGGATTCATGTGGCTCGCCCTCAGTCAGTAAAAGTAGCCGTCTGACTGCCAGCTCAGCACGAAGAAAGAGCAAAAGACTGAACCACAGAAACGTTAACAGggtTGAGTCAGGAAAGGCTGGCTGCTTTTCTCCAAGGGTGGCCAAAAAAGAGACAACGAGAAAGTCCCTGCGTCTGCGCTTCAGCCTCTCAGGGAAAACCACCCGAGATAGTAGTGTCATTTCAAATTCTCTACCGGTGCCAaaggggtcagaggtcattgGCTGGCGCCTAGCGACACAAGAGAGCGTCACCAGTTTTCACTTCAAAGACGCTGCATTTAGTCCAGCTGTACTGGCAAACAGTACTTCACAAGGAACCAAATACTTCAGTAAATCCGAAGACAACCTGCTGACCCCTCGTGAGGCAGAAGAGCCCGGGACATCCTGGAGTAGGGAGACTCTAGACGGAATCACAGAACACTCTTTCTCCGACACGCCAATGAACGCATACCTCAGCTACCGCTCAGAGCCAACCATAGTCATCAGCAAACCAGCTGTAATCAGCACCATTCCGAAGAGCCTCTGCTGTGCTACTAGTGCTGAGAGCTTAGCTAGTTCAGATTCTTTCCAAGAGGCCGGCTCTCTTCTGAAGGTCAGTGGAGCTTTTGCCAAATCTGACAGTAAGGGTCATACTACTGACAGAGAGGAACccaaagaaaaaacagaggaatCTTCATGTGCAAACGATATCCCTGCTTCTTCAAATTCCTCTTCACTTTTACAAACTTCAGGTGaactaaagaaaaatgttgaaaCACCACGGAAGGTTTTGAAGGATGATGAGCATATCATCACTTTTGGACAAACTGAGCTTGTTCCCTTGTCTCCTCTGCATATAGACAGTACTTTGTTTGAAGCTGCAGAGAGTTCAGGTGTAGTCAAAGATACCCACAAGGCCTCTGTGAGTGCTGACAATGAGAGCAGTTTGCTGTTTAGAGACAGCTCAGCAGCTTGTGCAGACTGCAGCCAGCTGATTGATGCTCTAGACATCCAAAGCCCTGTGGCCTTCAGGCTCAACAGCTCAATCACAGTTCAGTCTACACCATTTTCAGGAAGAGAGCAAACAGAGGAACTCAATACCTCGCAGACTGAGAAGTTCAAAGAGCCATCGTTGTTGGAAAAGTCTTCCAAGTCTTCAAGTCACCATGGAGCCACACTTGGTCCCATGGAAACACGTAAAATGAGAGTGGCTGACCATGTCCAGCGTTTCAACATGCTGACACTCAGTTCGCCCCAAGCCCAAGCCCAAGCTCAAGCTCGATCTCCTTTGAAGTTCCAGCGAACACCCGTACGGCAGTCAGTCAGGAGGTTCAACTCTCTGAACCAGAGGAAAGACAACAGGTCTGGGTGGTGTGCTACAAGTCAAGGTTCCTCCATGATTAAAGCAGTTAGTGTAGAAGGTGGCCATTTCAGTGGACTTCAACAACAACCTCAACCTTGTGAGGTCTTCTGCCTGCCTCCTAATGATAATGAAGGCTCTTCAAAGACAAAGCTACCAGTGTCTTCCCAAAAGCCAGCCAACAGTAGGCACTGTGCCTTGGGGGATGTAACCAATAGGGTGGCACCCAAGACCAAGGGCAGTGGATCATCATCAGCTCCCAAATGTGCCACATCTGAAGTGGCCGAGTCTGTCCTGCTTCAAGCAGCTGAGAAAGGGTACCGAGGTTCACCCAAGACCCCCCTTACACACGGCACACTTCTCTCCGCTATGAAGCCAATAGATCTGTAAAAGTACAGTACAACTGAAATGAGTCTTTTCGACTTATTGCTTTACAATTTCTTTTTCAGGGGTAATTTATTTTGTGACATTGCTTTGAAGCTGTTCTTGGTTTAGTGTAGTTGCGATATATATTCGTTCTGTCTAGCCATGACATTAGTTAAGTTATGCGCCag
>XM_026919913.2
GAACATTATTGTGCAGCCAATGGCGTCGTGTTTGAGGGGCAGCGCTGCCGTTTGAAACACGTCCACAAAGGAAGTAGTTAGAGAGCTAGAAGTTAGCTAACTGGTGCGTTGGAACGGAAACATTAATGTTGTTCATATAGAAGACGGTTATAATTCGTATTATGTGTAAATGCAGACGGAGGAATGTTAAATGCGTCAAAATGCTGAACAGGTAGGCGGGCTAGTTAGCTAATAGCGCGCATATTGACTGTATAGCAACATAGCGTTAACGTAAACGAGATAGCTTACTGTATGTAGCACCACTTTTCCAGGTGATTAGCCGGGTTATGGTTATGCAGTGAAAGACGAATATAGCTCGCTGTATCAACTGAGAGCACACACGTTTGTTTAGCGTTACTGGTTTTGTTGAAGAGTTTCTTGCAGTCTATGGGAAGGGAGTAAGATTAGCTAAAACCGCACACTTGTGCAGTGTACGTGATATAGGCGTTTGTTTTCTATAGACGTCTCTGAGCACCTTGTTTGCTAAATCTAGCCTAAATAAGAAGCTAGGCAAGTGAGTTCAAttcaaaaagaagaagaggaagcagCAGCAGTATGAAGACTGCAGAGAGAAATGTGGTGCGTCTTGCAGTAGTTCAGCATCTTCGTGCAACTTTCGCCATCAAGACGAAGAACTGGAACAAATGCAAAAGCAGCAAGTCTACAGCAGGCAATGGGGTGAAGGTCTTTGGAGTGGCTTTAGAAAGTCTACCACATTGTCATGTGCTAGACTACGGAGATATCCCCTGCTTCCTAGTGGATGCCTGTACATGCCTTCTGGGGCATTTGGACACAGAGGGCCTGTTTAGAAAATCAGGAGCTATTGTTCGAGTGAAGGCGCTTAGGGTAAAGTTGGATCAGGCCGAAGAGTGCCTGTCCACCGCGCTGCCGTCAGACATAGCGGGACTCCTGAAGCAGTTCTTCAGGGAGCTGCCTGAGCCTCTTCTGGCCACAGACCTACAGAGCAGCTTTCTAAAAGCCCAGGAGCTGCCCACTTTGGAGGAGAGGACTTCAGCAACCCTCCTGCTGTCCTGTGTGTTGGCGCAAGAGAATTTAAACACTCTGCGCTACTTCTGCAGCTTCCTGAAAAGGGTTTCTCAGAGATCTGCTGAAAACAAGATGGACAGCAGCaatctttctgtcattttcGCCCCAAACCTCTTTCACTGGGGGGACGGAACAGAGAAAGTGAACGCCAGCACAGAGAAGAGACTAAAGCTTCAAGCTGCTGTGGTGCAGTGCCTCATAGATAATGCTCAGGGTCTAgGTGTGGTACCAGATTTCCTTATGGCCAAAGTTCCAGCCATGCTAGGTTGTGAATCAGGAGTGTTTTCCCCTTCAGATGCTGTGGAGGAGGGAAACACACCCTCGGGTGTAAAGAGATGCAGGCGCAGTTTAGGAGTCATTTCCACTGGTACCCCTCTTGTTGGAACCCCTAAGCGCAAACTGCCTCTAGAGTCTGGACACAGTTATGGACTCTCCAACAAGAAGCGCAGGTCTATCAAGAACCTCGGGCTGGAACTACTACCAAATGCATTTTTTGGAGGAATCTCCACCCCTGGATCAGTCCACAGTGCCTCAGGAACCCTGGATTCATGTGGCTCGCCCTCAGTCAGTAAAAGTAGCCGTCTGACTGCCAGCTCAGCACGAAGAAAGAGCAAAAGACTGAACCACAGAAACGTTAACAGggtTGAGTCAGGAAAGGCTGGCTGCTTTTCTCCAAGGGTGGCCAAAAAAGAGACAACGAGAAAGTCCCTGCGTCTGCGCTTCAGCCTCTCAGGGAAAACCACCCGAGATAGTAGTGTCATTTCAAATTCTCTACCGGTGCCAaaggggtcagaggtcattgGCTGGCGCCTAGCGACACAAGAGAGCGTCACCAGTTTTCACTTCAAAGACGCTGCATTTAGTCCAGCTGTACTGGCAAACAGTACTTCACAAGGAACCAAATACTTCAGTAAATCCGAAGACAACCTGCTGACCCCTCGTGAGGCAGAAGAGCCCGGGACATCCTGGAGTAGGGAGACTCTAGACGGAATCACAGAACACTCTTTCTCCGACACGCCAATGAACGCATACCTCAGCTACCGCTCAGAGCCAACCATAGTCATCAGCAAACCAGCTGTAATCAGCACCATTCCGAAGAGCCTCTGCTGTGCTACTAGTGCTGAGAGCTTAGCTAGTTCAGATTCTTTCCAAGAGGCCGGCTCTCTTCTGAAGGTCAGTGGAGCTTTTGCCAAATCTGACAGTAAGGGTCATACTACTGACAGAGAGGAACccaaagaaaaaacagaggaatCTTCATGTGCAAACGATATCCCTGCTTCTTCAAATTCCTCTTCACTTTTACAAACTTCAGGTGaactaaagaaaaatgttgaaaCACCACGGAAGGTTTTGAAGGATGATGAGCATATCATCACTTTTGGACAAACTGAGCTTGTTCCCTTGTCTCCTCTGCATATAGACAGTACTTTGTTTGAAGCTGCAGAGAGTTCAGGTGTAGTCAAAGATACCCACAAGGCCTCTGTGAGTGCTGACAATGAGAGCAGTTTGCTGTTTAGAGACAGCTCAGCAGCTTGTGCAGACTGCAGCCAGCTGATTGATGCTCTAGACATCCAAAGCCCTGTGGCCTTCAGGCTCAACAGCTCAATCACAGTTCAGTCTACACCATTTTCAGGAAGAGAGCAAACAGAGGAACTCAATACCTCGCAGACTGAGAAGTTCAAAGAGCCATCGTTGTTGGAAAAGTCTTCCAAGTCTTCAAGTCACCATGGAGCCACACTTGGTCCCATGGAAACACGTAAAATGAGAGTGGCTGACCATGTCCAGCGTTTCAACATGCTGACACTCAGTTCGCCCCAAGCCCAAGCCCAAGCTCAAGCTCGATCTCCTTTGAAGTTCCAGCGAACACCCGTACGGCAGTCAGTCAGGAGGTTCAACTCTCTGAACCAGAGGAAAGACAACAGGTCTGGGTGGTGTGCTACAAGTCAAGGTTCCTCCATGATTAAAGCAGTTAGTGTAGAAGGTGGCCATTTCAGTGGACTTCAACAACAACCTCAACCTTGTGAGGTCTTCTGCCTGCCTCCTAATGATAATGAAGGCTCTTCAAAGACAAAGCTACCAGTGTCTTCCCAAAAGCCAGCCAACAGTAGGCACTGTGCCTTGGGGGATGTAACCAATAGGGTGGCACCCAAGACCAAGGGCAGTGGATCATCATCAGCTCCCAAATGTGCCACATCTGAAGTGGCCGAGTCTGTCCTGCTTCAAGCAGCTGAGAAAGGGTACCGAGGTTCACCCAAGACCCCCCTTACACACGGCACACTTCTCTCCGCTATGAAGCCAATAGATCTGTAAAAGTACAGTACAACTGAAATGAGTCTTTTCGACTTATTGCTTTACAATTTCTTTTTCAGGGGTAATTTATTTTGTGACATTGCTTTGAAGCTGTTCTTGGTTTAGTGTAGTTGCGATATATATTCGTTCTGTCTAGCCATGACATTAGTTAAGTTATGCGCCag

Function

NR:

description
PREDICTED: rho GTPase-activating protein 11A-like isoform X3

GO: NA

KEGG:

id description
K20635 ARHGAP11; Rho GTPase-activating protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919912.2 True 3635 mRNA 0.48 12 20821801 20835679
XM_026919913.2 False 3560 mRNA 0.48 11 20821801 20835679

Neighbor

gene id symbol gene type direction distance location
LOC113530231 NA coding downstream 88749 20732930 ~ 20733052 (-)
LOC113530100 LOC108270491,LOC108430665,LOC106610839,LOC107678700,LOC106587081,LOC102312465,LOC105908186 coding downstream 92974 20569883 ~ 20728827 (-)
chrm5a LOC108269673,LOC108430663 coding downstream 275507 20544766 ~ 20546294 (-)
acp7 acp7,papl coding downstream 300375 20501149 ~ 20521426 (-)
LOC113530102 thbs1,LOC108270370,LOC107719693,LOC107568499,LOC107687209,LOC107743901,LOC107678760 coding downstream 368001 20444195 ~ 20453800 (-)
actc1b acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding upstream 2378 20838057 ~ 20842152 (-)
LOC113530222 LOC108269994 coding upstream 60955 20896634 ~ 20956265 (-)
LOC113529663 NA coding upstream 190828 21026507 ~ 21040538 (-)
ankrd9 ankrd9 coding upstream 346086 21181765 ~ 21183223 (-)
prkd1 prkd1,LOC107590910,LOC107719483 coding upstream 555967 21391646 ~ 21438109 (-)
G169126 NA non-coding downstream 248188 20573407 ~ 20573613 (-)
G169118 NA non-coding downstream 256973 20564155 ~ 20564828 (-)
G169109 NA non-coding downstream 273924 20547645 ~ 20547877 (-)
G169104 NA non-coding downstream 281518 20538862 ~ 20540283 (-)
G168908 NA non-coding downstream 378029 20442997 ~ 20443772 (-)
LOC113529548 NA non-coding upstream 395264 21230943 ~ 21241637 (-)
G169424 NA non-coding upstream 468527 21304206 ~ 21304537 (-)
G169435 NA non-coding upstream 482547 21318226 ~ 21318440 (-)
G169454 NA non-coding upstream 532761 21368440 ~ 21373041 (-)
LOC113529764 NA non-coding upstream 670756 21506435 ~ 21514989 (-)
grem1b LOC108269477 other downstream 4362 20813689 ~ 20817439 (-)
G169119 NA other downstream 256002 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 491055 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 520247 20298511 ~ 20301554 (-)
srp14 srp14,LOC106610862 other downstream 803084 20013579 ~ 20018717 (-)
bmf1 bmf other upstream 252624 21088303 ~ 21119625 (-)
G170023 NA other upstream 1279886 22115565 ~ 22115876 (-)
G170435 NA other upstream 2019815 22855494 ~ 22863767 (-)
greb1 greb1 other upstream 2313064 23148743 ~ 23179511 (-)
luzp1 luzp1 other upstream 3654559 24490238 ~ 24544079 (-)

Expression


Co-expression Network