prkd1 (prkd1,LOC107590910,LOC107719483)


Basic Information

Item Value
gene id prkd1
gene name prkd1,LOC107590910,LOC107719483
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21391646 ~ 21438109 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919985.2
acacacacacacacactgactcattTGATCGCAGCATGTTAGTTCTTAGAATGATTCTGAACGCAAGAACCCGTGTTGTACACGCAGATCTGTCTAATGTAGTGATTGTGTGCTCACCGGAACAGCCGGGAGGCGGTGTCTATCAGACCCCAACATTAAGCCTATCTGACGTCTATAGggctccatcatcatcatcatcatcatcatcgccccTCAACGGCCAAATAACTCTTCGCTTTTTACAGTGCCTCTGAATGTATTccaatttattattctttttcctTCGTCATTTACCTTCATGACAGCGGCAGGAATTTGGGGCGATTGGAAGTTTTGCTCCCCGCGCGTGCAGGTGGGCGTTCATTAGAAAACAGAGTGCCCTGACGAAACGCACTGAGTGATTAGTTGACTAATCCCGCCGCGACCGCTTCCCCGCTTTGCGCCGCACGGATTCCCCATGAGTGTTCCTCCGGTGATCCGTGCTCCGAGCCCCGTGCCCGGCGCGCGCGGAGTCTCCTTCCACATGCAGATCGGTCTGAGCCGCGAGCCCGTGCTGCTCGACTCCGGAGACTTCAGCCTCGCGCAGGTCCGGGAAATGGCGTGCTCCATCGTCGACCAGAAGTTCCCAGAGTGTGGCTTCTATGGGATATATGACAAGATCCTACTTTTTCGTCATGACCCAACCTCAGAGAACATCTTGCAGCTGGTCAAGTGTGCAGCTGACATCATGGAGGGAGATCTGGTGGAGGTAGTGCTCTCAGCTTCAGCTACAGTAGAGGACTTCCAGATCAGACCTCACACTCTGTTTGTCCACTCGTACCGGGCTCCAGCCTTCTGTGATCACTGTGGAGAGATGTTATGGGGTCTGGTCAGGCAGGGACTCAAGTGTGAAGGTTGTGGACTGAATTACCACAAGCGTTGCGCTTTCAAGATTCCAAACAATTGCAGTGGTATTCGGAAACGGCGTCTGTCGAACGTGTCCCTCACCGGCCTGACCAACACTCGTTCTGTTTCTGCTGAACCTTCCCCCAGCCCCTCTGATGAAGCTTTACTAtctcctgtcagtcccagtattGAGCAGAAGGACATGTTTCCTGGAAGAGGGCGCTCCAACTCGCAGTCGTACATCGGGCGCCCGATTGAGCTCGACAAAATCCTGCTGTCCAAAGTCAAGGTGCCTCATACGTTTGTCATCCACTCCTACACGCGCCCCACCGTCTGCCAGCACTGCAAGAAGCTGCTCAAGGGCCTGTTCCGCCAGGGCCTACAGTGCAAAGATTGCAAATTCAACTGCCACAAACGATGTGCACCTAAAGTGCCAAACAACTGCCTTGGAGAGGTGTCAAGGAATGGAGACCTGTTGAGTCCTGGAGCTGAGTTGGATGTGTTGATGGCAGAAGGCTGTGATGACCATGATAGCGAGAGAAACAGTCCCATCATAGATGACCTGGAGGAATCCCTGGTTGCAGACTCTTCAGCCCTGCTGGATGTAGGCCACTGTGAACTCGGAGATTTTCATGATCCAGATCCTGATGAATCCAACAGAATCATCAGTCCATGCACCAGCAGCAATATCCCTCTCATGCGAGTGGTCCAGTCAGTGAAGCACATCAAGAGGAAAAACAGCAATGTCATGAAGGAGGGATGGCTTGTGCACTTCACTAGCAAGGACACACTGCGTAAGAGGCATTACTGGCGACTGGATAGCAAGTGCATTACTCTGTTCCAGAATGATACTGGGAGCAAATATTATAAGGAAATCCCCTTATCTGAGGTTCTGTCCCTGGAGCCTGCTCAGAACTTCAGCTTGCTTCCTGAAGGTGCCAATCCTCACTGCTTTGAGATTGCCACCGCCACTCTAGTGTATTATGTAGGGGAGAACCTGTCTCAGGAAGACTACTCTCTGTTCCACGGCAGCGTGCTGATCAGTGGAACTGGCCAGGATGTGGCTCACATGTGGCAAACGGCCATCCAGCATGCCCTCATGCCTGTTATTTCCAAGGGCACAGCTCACAGCAGCCGACACAGCTACCACAAAGATGTCTCCATCAGCATCTCTGTGTCTAACTGTCAGGTTCAGGAGAATGTGGACATTAGCACAGTTTATCAGATATTCCCTGATGAAGTTCTTGGATCTGGGCAATTTGGCATTGTCTATGGCGGAAAGCACAGAAAAACAGGGAGAGACGTGGCAATCAAGATTATAGACAAACTGCGCTTCCCCACTAAACAAGAGAGTCAGCTGCGCAATGAGGTTGCCATCCTGCAGAACCTTCACCACCCTGGGGTGGTGAACCTGGAGTGCATGTTTGAGACTCCAGAGCGTGTGTTTGTCGTCATGGAGAAGCTCCATGGTGACATGCTGGAGATGATACTGTCTAGTGAGAAAGGGAGGCTGCCAGAGCGCATCACTAAGTTCCTTGTGACACAGATCCTTGTAGCGCTACGCCATCTTCACTTCAAGAACATCGTACACTGTGACCTTAAACCCGAGAATGTCTTACTAGCATCTGCTGACTCCTTTCCACAAGTAAAACTGTGTGATTTCGGGTTCGCTCGGATCATTGGCGAGAAGTCTTTCAGGCGCTCAGTGGTGGGCACGCCGGCCTACCTGGCACCTGAGGTGCTGAGGAACAAGGGCTACAACCGCTCACTAGACATGTGGAGTGTTGGCGTCATCATCTACGTCAGCCTCAGTGGAACATTCCCATTCAATGAGGATGAGGACATCCATGACCAGATCCAAAATGCTGCCTTCATGTACCCACCCAACCCATGGAAGAAGGTGACTTCAGAAGCAATTGACCTCATTAATAACCTGCTGCAAGTCAAAATGAGGAAGCGCTACAGTGTGGACAAGTCCCTCAGTCATCCCTGGCTACAGGACTACCAAATGTGGCTGGACCTGCGTAATCTAGAGTGTAAGATGCAGGAGCGATACATCACACACGAGAGTGATGATATGCGCTGGGAGCATTTCGCTGAGCAAAATGGCCTGCAGTATCCTGCCCACCTCATTAACCCTCATGCTGATGTCACTGAGGAGGTGGAGTCTGACGAGGCCATAATGAGCATGCTCAGCGATCGAGTCAGTGCGCTATAGTTTGCTGCCAATCCCTTTAAGACACAACACAAATAAAGCCAAATGCACAATTCAGGACAACACAAGTCAACACACTTATACTCTGCTGCCATATTAACACATTCATATTGTACTTTATTACACTATAGATAACAGTAAATTTTGCCAAACATTCAGTGCCTAAAGAGTATAAGTAAATCATATTAAATTCATAACCATTCCcctgcacatttttaaaaatctcaacaTTGTCATTCACATTACACTGAACAAAGCACAATACATTGAATACTACTTAACCAAAAACATCTGTTTTtcagaataaaagagaaatagtgtttattttaaaatgtcttttaaaatggCCCTACAAGtaagtaaaactgtaaaactatGAGAACCTGTGCTGGATAAGAGAAATTTCTAAAGCCATCAAGAATTAATCTGCAGTATGAATAAAGCCATCAAGAATTAATCTGCAGTTGTGAAAGTCACAAAGCACTACAATGGTGTGGTGACTGTTGCCTTAGTGGATGTGTAACTATTAGAAAAAGTCCTTGCAGCTTTTGTGGGCTTCTGTGGTTTGTAGGGtgcatatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgggccATTGTATGTGGGTATGTGGAGAATTGACTTGTGCAACAAGTCAACCAGCTTGAAAAGTAACACTGcctgcagtttttttcttctcttgctTTCTCCTGTGTcagttgtaataaaaaaaacaagaaacatga
>XM_026919986.2
acacacacacacacactgactcattTGATCGCAGCATGTTAGTTCTTAGAATGATTCTGAACGCAAGAACCCGTGTTGTACACGCAGATCTGTCTAATGTAGTGATTGTGTGCTCACCGGAACAGCCGGGAGGCGGTGTCTATCAGACCCCAACATTAAGCCTATCTGACGTCTATAGggctccatcatcatcatcatcatcatcatcgccccTCAACGGCCAAATAACTCTTCGCTTTTTACAGTGCCTCTGAATGTATTccaatttattattctttttcctTCGTCATTTACCTTCATGACAGCGGCAGGAATTTGGGGCGATTGGAAGTTTTGCTCCCCGCGCGTGCAGGTGGGCGTTCATTAGAAAACAGAGTGCCCTGACGAAACGCACTGAGTGATTAGTTGACTAATCCCGCCGCGACCGCTTCCCCGCTTTGCGCCGCACGGATTCCCCATGAGTGTTCCTCCGGTGATCCGTGCTCCGAGCCCCGTGCCCGGCGCGCGCGGAGTCTCCTTCCACATGCAGATCGGTCTGAGCCGCGAGCCCGTGCTGCTCGACTCCGGAGACTTCAGCCTCGCGCAGGTCCGGGAAATGGCGTGCTCCATCGTCGACCAGAAGTTCCCAGAGTGTGGCTTCTATGGGATATATGACAAGATCCTACTTTTTCGTCATGACCCAACCTCAGAGAACATCTTGCAGCTGGTCAAGTGTGCAGCTGACATCATGGAGGGAGATCTGGTGGAGGTAGTGCTCTCAGCTTCAGCTACAGTAGAGGACTTCCAGATCAGACCTCACACTCTGTTTGTCCACTCGTACCGGGCTCCAGCCTTCTGTGATCACTGTGGAGAGATGTTATGGGGTCTGGTCAGGCAGGGACTCAAGTGTGAAGGTTGTGGACTGAATTACCACAAGCGTTGCGCTTTCAAGATTCCAAACAATTGCAGTGGTATTCGGAAACGGCGTCTGTCGAACGTGTCCCTCACCGGCCTGACCAACACTCGTTCTGTTTCTGCTGAACCTTCCCCCAGCCCCTCTGATGAAGCTTTACTAtctcctgtcagtcccagtattGAGAAGGACATGTTTCCTGGAAGAGGGCGCTCCAACTCGCAGTCGTACATCGGGCGCCCGATTGAGCTCGACAAAATCCTGCTGTCCAAAGTCAAGGTGCCTCATACGTTTGTCATCCACTCCTACACGCGCCCCACCGTCTGCCAGCACTGCAAGAAGCTGCTCAAGGGCCTGTTCCGCCAGGGCCTACAGTGCAAAGATTGCAAATTCAACTGCCACAAACGATGTGCACCTAAAGTGCCAAACAACTGCCTTGGAGAGGTGTCAAGGAATGGAGACCTGTTGAGTCCTGGAGCTGAGTTGGATGTGTTGATGGCAGAAGGCTGTGATGACCATGATAGCGAGAGAAACAGTCCCATCATAGATGACCTGGAGGAATCCCTGGTTGCAGACTCTTCAGCCCTGCTGGATGTAGGCCACTGTGAACTCGGAGATTTTCATGATCCAGATCCTGATGAATCCAACAGAATCATCAGTCCATGCACCAGCAGCAATATCCCTCTCATGCGAGTGGTCCAGTCAGTGAAGCACATCAAGAGGAAAAACAGCAATGTCATGAAGGAGGGATGGCTTGTGCACTTCACTAGCAAGGACACACTGCGTAAGAGGCATTACTGGCGACTGGATAGCAAGTGCATTACTCTGTTCCAGAATGATACTGGGAGCAAATATTATAAGGAAATCCCCTTATCTGAGGTTCTGTCCCTGGAGCCTGCTCAGAACTTCAGCTTGCTTCCTGAAGGTGCCAATCCTCACTGCTTTGAGATTGCCACCGCCACTCTAGTGTATTATGTAGGGGAGAACCTGTCTCAGGAAGACTACTCTCTGTTCCACGGCAGCGTGCTGATCAGTGGAACTGGCCAGGATGTGGCTCACATGTGGCAAACGGCCATCCAGCATGCCCTCATGCCTGTTATTTCCAAGGGCACAGCTCACAGCAGCCGACACAGCTACCACAAAGATGTCTCCATCAGCATCTCTGTGTCTAACTGTCAGGTTCAGGAGAATGTGGACATTAGCACAGTTTATCAGATATTCCCTGATGAAGTTCTTGGATCTGGGCAATTTGGCATTGTCTATGGCGGAAAGCACAGAAAAACAGGGAGAGACGTGGCAATCAAGATTATAGACAAACTGCGCTTCCCCACTAAACAAGAGAGTCAGCTGCGCAATGAGGTTGCCATCCTGCAGAACCTTCACCACCCTGGGGTGGTGAACCTGGAGTGCATGTTTGAGACTCCAGAGCGTGTGTTTGTCGTCATGGAGAAGCTCCATGGTGACATGCTGGAGATGATACTGTCTAGTGAGAAAGGGAGGCTGCCAGAGCGCATCACTAAGTTCCTTGTGACACAGATCCTTGTAGCGCTACGCCATCTTCACTTCAAGAACATCGTACACTGTGACCTTAAACCCGAGAATGTCTTACTAGCATCTGCTGACTCCTTTCCACAAGTAAAACTGTGTGATTTCGGGTTCGCTCGGATCATTGGCGAGAAGTCTTTCAGGCGCTCAGTGGTGGGCACGCCGGCCTACCTGGCACCTGAGGTGCTGAGGAACAAGGGCTACAACCGCTCACTAGACATGTGGAGTGTTGGCGTCATCATCTACGTCAGCCTCAGTGGAACATTCCCATTCAATGAGGATGAGGACATCCATGACCAGATCCAAAATGCTGCCTTCATGTACCCACCCAACCCATGGAAGAAGGTGACTTCAGAAGCAATTGACCTCATTAATAACCTGCTGCAAGTCAAAATGAGGAAGCGCTACAGTGTGGACAAGTCCCTCAGTCATCCCTGGCTACAGGACTACCAAATGTGGCTGGACCTGCGTAATCTAGAGTGTAAGATGCAGGAGCGATACATCACACACGAGAGTGATGATATGCGCTGGGAGCATTTCGCTGAGCAAAATGGCCTGCAGTATCCTGCCCACCTCATTAACCCTCATGCTGATGTCACTGAGGAGGTGGAGTCTGACGAGGCCATAATGAGCATGCTCAGCGATCGAGTCAGTGCGCTATAGTTTGCTGCCAATCCCTTTAAGACACAACACAAATAAAGCCAAATGCACAATTCAGGACAACACAAGTCAACACACTTATACTCTGCTGCCATATTAACACATTCATATTGTACTTTATTACACTATAGATAACAGTAAATTTTGCCAAACATTCAGTGCCTAAAGAGTATAAGTAAATCATATTAAATTCATAACCATTCCcctgcacatttttaaaaatctcaacaTTGTCATTCACATTACACTGAACAAAGCACAATACATTGAATACTACTTAACCAAAAACATCTGTTTTtcagaataaaagagaaatagtgtttattttaaaatgtcttttaaaatggCCCTACAAGtaagtaaaactgtaaaactatGAGAACCTGTGCTGGATAAGAGAAATTTCTAAAGCCATCAAGAATTAATCTGCAGTATGAATAAAGCCATCAAGAATTAATCTGCAGTTGTGAAAGTCACAAAGCACTACAATGGTGTGGTGACTGTTGCCTTAGTGGATGTGTAACTATTAGAAAAAGTCCTTGCAGCTTTTGTGGGCTTCTGTGGTTTGTAGGGtgcatatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgggccATTGTATGTGGGTATGTGGAGAATTGACTTGTGCAACAAGTCAACCAGCTTGAAAAGTAACACTGcctgcagtttttttcttctcttgctTTCTCCTGTGTcagttgtaataaaaaaaacaagaaacatga

Function

symbol description
prkd1 Predicted to enable ATP binding activity; calcium-dependent protein kinase C activity; and metal ion binding activity. Acts upstream of or within regulation of angiogenesis and regulation of lymphangiogenesis. Predicted to be located in cytoplasm and membrane. Orthologous to human PRKD1 (protein kinase D1).

NR:

description
serine/threonine-protein kinase D1 isoform X1

GO:

id name namespace
GO:1901490 regulation of lymphangiogenesis biological_process
GO:0045765 regulation of angiogenesis biological_process

KEGG:

id description
K06070 PKD; protein kinase D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919985.2 True 3856 mRNA 0.48 19 21391646 21438109
XM_026919986.2 False 3853 mRNA 0.48 19 21391646 21438109

Neighbor

gene id symbol gene type direction distance location
ankrd9 ankrd9 coding downstream 208423 21181765 ~ 21183223 (-)
LOC113529663 NA coding downstream 351108 21026507 ~ 21040538 (-)
LOC113530222 LOC108269994 coding downstream 435381 20896634 ~ 20956265 (-)
actc1b acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding downstream 549494 20838057 ~ 20842152 (-)
arhgap11a LOC108270194 coding downstream 555967 20821801 ~ 20835679 (-)
strn3 strn3,LOC107590905,LOC106611207,LOC107694787 coding upstream 118974 21557083 ~ 21591367 (-)
hectd1 hectd1,LOC107582380,LOC107697712,LOC107719534,LOC100380626,LOC102302438 coding upstream 160000 21598109 ~ 21649666 (-)
heatr5a heatr5a coding upstream 214604 21652713 ~ 21737438 (-)
mis18bp1 mis18bp1,LOC108261907 coding upstream 304646 21742755 ~ 21760301 (-)
mdga2a mdga2,mamdc1 coding upstream 342911 21781020 ~ 22088387 (-)
G169454 NA non-coding downstream 18605 21368440 ~ 21373041 (-)
G169435 NA non-coding downstream 73206 21318226 ~ 21318440 (-)
G169424 NA non-coding downstream 87109 21304206 ~ 21304537 (-)
LOC113529548 NA non-coding downstream 150009 21230943 ~ 21241637 (-)
G169126 NA non-coding downstream 818033 20573407 ~ 20573613 (-)
LOC113529764 NA non-coding upstream 68326 21506435 ~ 21514989 (-)
G169611 NA non-coding upstream 101192 21539301 ~ 21539545 (-)
G169647 LOC108270035 non-coding upstream 322415 21760524 ~ 21762786 (-)
G169648 NA non-coding upstream 326849 21764958 ~ 21765221 (-)
G169650 NA non-coding upstream 327993 21766102 ~ 21767152 (-)
bmf1 bmf other downstream 272021 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 574207 20813689 ~ 20817439 (-)
G169119 NA other downstream 825847 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 1060900 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 1090092 20298511 ~ 20301554 (-)
G170023 NA other upstream 677456 22115565 ~ 22115876 (-)
G170435 NA other upstream 1417385 22855494 ~ 22863767 (-)
greb1 greb1 other upstream 1710634 23148743 ~ 23179511 (-)
luzp1 luzp1 other upstream 3052129 24490238 ~ 24544079 (-)
G171256 NA other upstream 3343173 24781282 ~ 24926224 (-)

Expression


Co-expression Network