gch1 (gch1,LOC107583460,LOC107564951,LOC107693131,LOC107723641,LOC107751761,LOC107680005)


Basic Information

Item Value
gene id gch1
gene name gch1,LOC107583460,LOC107564951,LOC107693131,LOC107723641,LOC107751761,LOC107680005
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25320510 ~ 25335259 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925989.2
GAAGAGAAAAGGCAGCTGAGCGCTGAGGAGCTAAACGGAGAAACTTCACACGAAAAGCTTAGAGATCATCACTGCTATGATGGAGCGCTCCAAGCAAAGAGAAAGCGAAGCCTCATCAAGCAACGATACCGCCCTAAATGGACTTTTGGATGGGATGGAGAAGTGGAACGGAGCACCTAAAGAGACGCCCAAAGGTGAGAAACCAACCAAGAGCATCACCCGTGCTCCATGTTCGTCTGTGATggagagctggagagaagagCGCACCCGGAGTGTTGAAGATAATGAGATGAGCCTGCCGAGTATCGTCGCCGCCTATACCACCATCCTCAGGGGTCTGGGAGAAGATCCGCAGAGGCAGGGCCTGCTGAAGACGCCTTACCGGGCAGCCACGGCCATGCAGTTCTTCACCAAGGGATATCAGGAGAAAATCATAGATATTCTGAACGACGCCATTTTCGACGAAGACCACGATGAGATGGTGATTGTGAAGGACATCgacatgttctccatgtgcgAGCACCACCTCGTCCCCATCTTCGGCAAAGTCCACATAGGATACCTACCGAACAAGAGGGTGCTCGGCCTCAGCAAACTGGCAAGAATCGTTGAGATCTACAGCAGAAGGTTGCAAGTCCAGGAACGTCTCACCAAACAGATCGCCGTCGCCATCACTGAAGCTCTACAGCCCGCTGGAGTCGGAGTGGTCATCGAGGCAACTCACATGTGTATGGTGATGCGAGGCGTGCAGAAGATGAACAGTAAAACGGTGACAAGCACCATGCTGGGAGTTTTCCGCGAGGACCCCAAAACCAGAGATGAGTTCCTCACGTTGATCCGGAGCTGAGACAAGCCACGTGTGTAGATCAGACGTCCTTCTCCGACACGTCCATCTCTCACCATCATGTTGTTTCTATATTGGCCTCTAAGTGAGGCTGTGCTGCTGTTGGGCGTGTTCTCCCAGTGCTTGCTTTTTCAGAGGCAGGTATGGGAGATACCTCAGTTAAACCATCCCTCTTAGTGTttttacatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactcactcaAACAGGGATTTTGAGTGGTTTTTCACAATTTTAGAATGGTAAAATCAGTTATAGGTCCATGGATTCAAATTCTAATATAGCCAACagtttttattgttgtaataaaatcatgttttattattttgacaaATTATATAAAACCTTTTAGCCacttatatttattcatttggcaaatGAATTTATCCAAAACCACTTAGGAACAATCCAGTCCAAGCACAGAAATGAATTGATGAGGGTTAAAAATGTCACTCAGTGGCCCAACACAGACTCACTGACAGTCCTgggattattttaaacatagaaACTACCACTGCCATTGTGATCTGACCCGCATTAAAGCTGCAATATGTAActgtttctgttaaaaaaaaaaaatgagttgaATTGTTCAGTCAGTGTACGAGAAAAGCTTGTGTACTTGCGTTGCTGCATGTCACCCTGGAAAacctaaaatgttcatttaaagtTAGAGCTGTTGGGTCGGATTTCATGATTATGGGTTGTGCTACCCCTACTACGAGGTGTTTTAACGTGACATCATTAGATTACTTCACATACAGGGGCAGCACAattcattttacaaaatgtttctCTGCCACTTGCTTGCAATAACATAATCACACCAGAGAGGTCTCCAGATGCCCAAAAGTTACATACTGCAGTGTTAACTCACAGCATTTGTGCACAAGCAGTCGAGACAAAAGGGAAACCCAGCCATGAACCATTTCACTGATCAAGAGTTGGGTTTTTACTACACTGTGTATAATATGTCcaaaaatctaatctaacctAATGTTTAAATGAGAGGAAAGCGATGGATTTTGGTGACAGTGGTGGTGTATTCCCAAACCATACTCTGCATTTGATTCATACAAATGAAtcaaatttataaaatacagtaaaatcatACACAGAACATACACATCACATAGAAACATAACAGATAGAGGCAGGAGATCCTGATTGGTTTAAACTAATAGACGCTGTGTTTCTGATTGGTTCAGACTGATGGAAGCTGTGTTCCTGATTGGTTTAAATTGATAGAGATTGGACATTCTGATTGGTTTAAAATGATTGAGGCTGTGTTCCTGATTGGTTTAAAGTGATGGAGATCAGAGATTCTGGTTGGGTACAACTTAGAGATGCTGTGTTTCTGATTGGTTTAAATTTCTGGTGGTTGGAGATTCTGGTTAGTTTAAACTGATACAGGCTGTTTCTGATTGGTTTAAACTGATGGCGGTAAgagattctgattggtttaaATTGAGAGGCTGTGTTTCTGATTGGTTTAACTTTAAGGAGGTTGGATATTCTGATTGGTTTAATCTGATAGAGGCTGTGTTTCTGATTGGTTTATGCTTCTTGAGTTTTAATTGATGGCCTGAAAGAATATATCGATAATAATCTGGACTTAAACATACAAATTGTTTCTGCAATTCAAccattttcagtttaatttttaatcacaGATCAGTGTATCTAAACTGTGCTGTAATTTTTGTCACGTGTCAGTGTGTAAGGTTTGTTGTTCAGTCATGGCTCAAACTGTATTAACTCTGTTCTGTGTAACTGATGAACCACACAGCCAGTGAGCCACATAGCACCATgttgtgtactgtgtgtgtaatagtgttaCTTTAGCCTTCTAAATGTGCTGTATCGAAGGCCATCAGTGTTCTTCATGCCTGTGATAGGAcgatcttctttttttctctctgttgagtAAGGACCAAAGTTTGAAGTTGCAGCTGAGAGATAAAAAAGATCTCAACTTTGATAACTATGTTGATAAATGTGAGCATTCATATCACAGCGTCGGTGATGCACGCGATAGAATCCAAGAAAATATAGATGGAAAACAAAGGCTCAAAGAAAACATAGTTTACTACtcaaacatttatatacatataaaatgctAATAACATAAAGAGGAATTATATTAACTCATCAGTACACATCAGGTTTAGATGATATATTAgggcatttttattttgaatgtacCCCTTACGgtaatttgttgtgttttcGTGTTTGAATTATATATTCAGAAGAATGGATATATAActtttgataaataaatgtgtgtgtgttttacgtAAATGTAAGTGAGAAAGCGAGCACTTAACATTAGCGCTCCAGTACTGTTCACGTGGCCTTCTTCACCGGGACGCACCCAGTCCTGTATACACTACAGTGTTCATTTCCAGAAAACTGATgttaagttaataagaaaataaattatgtttgaaaatcg
>XM_026925990.2
AGAGAAAAGGCAGCTGAGCGCTGAGGAGCTAAACGGAGAAACTTCACACGAGTGAGAGCATTAAAGCTTAGAGATCATCACTGCTATGATGGAGCGCTCCAAGCAAAGAGAAAGCGAAGCCTCATCAAGCAACGATACCGCCCTAAATGGACTTTTGGATGGGATGGAGAAGTGGAACGGAGCACCTAAAGAGACGCCCAAAGGTGAGAAACCAACCAAGAGCATCACCCGTGCTCCATGTTCGTCTGTGATggagagctggagagaagagCGCACCCGGAGTGTTGAAGATAATGAGATGAGCCTGCCGAGTATCGTCGCCGCCTATACCACCATCCTCAGGGGTCTGGGAGAAGATCCGCAGAGGCAGGGCCTGCTGAAGACGCCTTACCGGGCAGCCACGGCCATGCAGTTCTTCACCAAGGGATATCAGGAGAAAATCATAGATATTCTGAACGACGCCATTTTCGACGAAGACCACGATGAGATGGTGATTGTGAAGGACATCgacatgttctccatgtgcgAGCACCACCTCGTCCCCATCTTCGGCAAAGTCCACATAGGATACCTACCGAACAAGAGGGTGCTCGGCCTCAGCAAACTGGCAAGAATCGTTGAGATCTACAGCAGAAGGTTGCAAGTCCAGGAACGTCTCACCAAACAGATCGCCGTCGCCATCACTGAAGCTCTACAGCCCGCTGGAGTCGGAGTGGTCATCGAGGCAACTCACATGTGTATGGTGATGCGAGGCGTGCAGAAGATGAACAGTAAAACGGTGACAAGCACCATGCTGGGAGTTTTCCGCGAGGACCCCAAAACCAGAGATGAGTTCCTCACGTTGATCCGGAGCTGAGACAAGCCACGTGTGTAGATCAGACGTCCTTCTCCGACACGTCCATCTCTCACCATCATGTTGTTTCTATATTGGCCTCTAAGTGAGGCTGTGCTGCTGTTGGGCGTGTTCTCCCAGTGCTTGCTTTTTCAGAGGCAGGTATGGGAGATACCTCAGTTAAACCATCCCTCTTAGTGTttttacatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactcactcaAACAGGGATTTTGAGTGGTTTTTCACAATTTTAGAATGGTAAAATCAGTTATAGGTCCATGGATTCAAATTCTAATATAGCCAACagtttttattgttgtaataaaatcatgttttattattttgacaaATTATATAAAACCTTTTAGCCacttatatttattcatttggcaaatGAATTTATCCAAAACCACTTAGGAACAATCCAGTCCAAGCACAGAAATGAATTGATGAGGGTTAAAAATGTCACTCAGTGGCCCAACACAGACTCACTGACAGTCCTgggattattttaaacatagaaACTACCACTGCCATTGTGATCTGACCCGCATTAAAGCTGCAATATGTAActgtttctgttaaaaaaaaaaaatgagttgaATTGTTCAGTCAGTGTACGAGAAAAGCTTGTGTACTTGCGTTGCTGCATGTCACCCTGGAAAacctaaaatgttcatttaaagtTAGAGCTGTTGGGTCGGATTTCATGATTATGGGTTGTGCTACCCCTACTACGAGGTGTTTTAACGTGACATCATTAGATTACTTCACATACAGGGGCAGCACAattcattttacaaaatgtttctCTGCCACTTGCTTGCAATAACATAATCACACCAGAGAGGTCTCCAGATGCCCAAAAGTTACATACTGCAGTGTTAACTCACAGCATTTGTGCACAAGCAGTCGAGACAAAAGGGAAACCCAGCCATGAACCATTTCACTGATCAAGAGTTGGGTTTTTACTACACTGTGTATAATATGTCcaaaaatctaatctaacctAATGTTTAAATGAGAGGAAAGCGATGGATTTTGGTGACAGTGGTGGTGTATTCCCAAACCATACTCTGCATTTGATTCATACAAATGAAtcaaatttataaaatacagtaaaatcatACACAGAACATACACATCACATAGAAACATAACAGATAGAGGCAGGAGATCCTGATTGGTTTAAACTAATAGACGCTGTGTTTCTGATTGGTTCAGACTGATGGAAGCTGTGTTCCTGATTGGTTTAAATTGATAGAGATTGGACATTCTGATTGGTTTAAAATGATTGAGGCTGTGTTCCTGATTGGTTTAAAGTGATGGAGATCAGAGATTCTGGTTGGGTACAACTTAGAGATGCTGTGTTTCTGATTGGTTTAAATTTCTGGTGGTTGGAGATTCTGGTTAGTTTAAACTGATACAGGCTGTTTCTGATTGGTTTAAACTGATGGCGGTAAgagattctgattggtttaaATTGAGAGGCTGTGTTTCTGATTGGTTTAACTTTAAGGAGGTTGGATATTCTGATTGGTTTAATCTGATAGAGGCTGTGTTTCTGATTGGTTTATGCTTCTTGAGTTTTAATTGATGGCCTGAAAGAATATATCGATAATAATCTGGACTTAAACATACAAATTGTTTCTGCAATTCAAccattttcagtttaatttttaatcacaGATCAGTGTATCTAAACTGTGCTGTAATTTTTGTCACGTGTCAGTGTGTAAGGTTTGTTGTTCAGTCATGGCTCAAACTGTATTAACTCTGTTCTGTGTAACTGATGAACCACACAGCCAGTGAGCCACATAGCACCATgttgtgtactgtgtgtgtaatagtgttaCTTTAGCCTTCTAAATGTGCTGTATCGAAGGCCATCAGTGTTCTTCATGCCTGTGATAGGAcgatcttctttttttctctctgttgagtAAGGACCAAAGTTTGAAGTTGCAGCTGAGAGATAAAAAAGATCTCAACTTTGATAACTATGTTGATAAATGTGAGCATTCATATCACAGCGTCGGTGATGCACGCGATAGAATCCAAGAAAATATAGATGGAAAACAAAGGCTCAAAGAAAACATAGTTTACTACtcaaacatttatatacatataaaatgctAATAACATAAAGAGGAATTATATTAACTCATCAGTACACATCAGGTTTAGATGATATATTAgggcatttttattttgaatgtacCCCTTACGgtaatttgttgtgttttcGTGTTTGAATTATATATTCAGAAGAATGGATATATAActtttgataaataaatgtgtgtgtgttttacgtAAATGTAAGTGAGAAAGCGAGCACTTAACATTAGCGCTCCAGTACTGTTCACGTGGCCTTCTTCACCGGGACGCACCCAGTCCTGTATACACTACAGTGTTCATTTCCAGAAAACTGATgttaagttaataagaaaataaattatgtttgaaaatcg

Function

symbol description
gch1 Predicted to enable GTP binding activity; GTP cyclohydrolase I activity; and zinc ion binding activity. Predicted to be involved in tetrahydrobiopterin biosynthetic process. Predicted to act upstream of or within tetrahydrofolate biosynthetic process. Predicted to be active in cytoplasm. Is expressed in brain; dopaminergic neurons; trunk; and xanthophore. Human ortholog(s) of this gene implicated in BH4-deficient hyperphenylalaninemia B; bipolar disorder; dystonia; and dystonia 5. Orthologous to human GCH1 (GTP cyclohydrolase 1).

NR:

description
PREDICTED: GTP cyclohydrolase 1

GO: NA

KEGG:

id description
K01495 GCH1, folE; GTP cyclohydrolase IA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925989.2 False 3329 mRNA 0.41 7 25320510 25335259
XM_026925990.2 True 3338 mRNA 0.41 7 25320510 25335257

Neighbor

gene id symbol gene type direction distance location
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding downstream 68207 25240086 ~ 25252303 (-)
txndc16 txndc16 coding downstream 114037 25182416 ~ 25206473 (-)
nid2a nid2,wu:fb77a09 coding downstream 213751 25056364 ~ 25106759 (-)
si:ch211-266o15.1 LOC108269816 coding downstream 273724 25009783 ~ 25046786 (-)
cep295 LOC108269817 coding downstream 328682 24974039 ~ 24991828 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 1287 25336546 ~ 25361861 (-)
socs4 socs4,LOC108270091,LOC107564995 coding upstream 34246 25369505 ~ 25371805 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding upstream 54672 25389931 ~ 25396747 (-)
ros1 NA coding upstream 62831 25398090 ~ 25418463 (-)
zgc:85722 LOC108270090,LOC108443409 coding upstream 96064 25431323 ~ 25468569 (-)
G171573 samd4a non-coding downstream 28572 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 31008 25287152 ~ 25289502 (-)
G171572 NA non-coding downstream 33729 25286042 ~ 25286781 (-)
G171543 NA non-coding downstream 48748 25267902 ~ 25271762 (-)
G171545 NA non-coding downstream 54540 25264368 ~ 25265970 (-)
G171594 NA non-coding upstream 54324 25389583 ~ 25389871 (-)
G171710 NA non-coding upstream 134245 25469504 ~ 25470074 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding upstream 169129 25504388 ~ 25509620 (-)
G171755 NA non-coding upstream 438245 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 642537 25977796 ~ 25978027 (-)
G171569 NA other downstream 61148 25258839 ~ 25259362 (-)
G171256 NA other downstream 394286 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 776431 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2140999 23148743 ~ 23179511 (-)
G170435 NA other downstream 2456743 22855494 ~ 22863767 (-)
G171734 NA other upstream 243680 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2229999 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2336364 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2564223 27899482 ~ 27910890 (-)
G172919 NA other upstream 2576978 27912237 ~ 27912544 (-)

Expression


Co-expression Network